F12714

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12714

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12714

Determination of introduced cDNA(s)

  • RAFL09-55-J10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-55-J10 - Resource: pda08451

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-55-J10 - full reading 
    TTCTAATCGA GAGATCAGAC GCGGCGGAGA CTGGCGGAGA TGATGAATTC 
    ATAAATTCCT TCTTCTCCTT TCCTCTCTTT TCATTTGATT GGCTTCTTAC 
    ACAGCTTCGT CATCATGTCT TGTCCTATCC ATCCTAGGCG TCTCTTCCTC 
    TGCTTGCTTA TTTCTCTCAC TTTCTTCGTC GTCGACCCTT CATCGCAGCA 
    TATCGAGGTC AAGAAGAAAC AAATGCGAGA GAAAGTACGC GAGATGTTCT 
    ATCATGCGTA TGACAATTAC ATGACTTATG CATTTCCGCA TGATGAGCTA 
    AAGCCTCTAA CTAAAAGTTT CACAGACTCC CTCAGTGAGC TTGGAAATCT 
    TAAGCTTGAA CACCTGCCAA CAGATTATAA TGGATCAGCT GTTACTCTTG 
    TTGAATCATT ATCCAGCCTT GCTATATTGG GGAACAGTAC AGAATTTGAA 
    AAGGGGGTTC TCTGGCTCTC AGAAAATCTT ACTTTCGATA TTGATGCCCG 
    GGTCAACCTT TTTGAGTGCA ATATAAGAGT TCTTGGAGGA CTTATCTCTG 
    CTCATCTTCT TGCAATTGAT CCAAATAATA GGTTGATTCA GGGTTCCTAC 
    AACAATCAGC TTCTTCGATT AGCTGAAGAC CTTGGAAAAC GTTTTTTACC 
    CGCGTTTGAA ACACCTACAG GATTACCATA TGCATGGATT AATTTGAAGA 
    ATGGAGTAAT GGAGAATGAG ACAACTGAAA CAAGCACTTC AGGATGTGGT 
    TCTCTCGTTC TTGAAATGGG AGCATTGTCA CGGCTCACTG GTGACCCGAG 
    GTTTGAATCA GCTGCACTAC GTGCGCTTCG TCAGCTATGG AGGATGCGAA 
    GTTCGTTAGA TCTGCTTGGG ACAACATTGG ATGTGGTAAC TGGGGAATGG 
    ATAGAGTACT CCTCTAGCAT TGGAGCTGGT ATATTGTTCA TTCAGAGGGA 
    TTCTAGTGGC AGTTCTTGTT CCGAAGAGAT AGCAAAATAA TTTTACTTAT 
    ATGTGTGGAA TTAACTTGTG CCTTAGATTG ATGTAGCTCT GATGTGTAAT 
    TTCATTTCTG GTCTTTTAAA GGGGTTGACT CTTTCTATGA ATACCTCTTG 
    AAGGCTTATA TTCTTTTTGG AAAAGAAGAC TACTGGCGAA TGTTTCATTC 
    TGCTTATCTG GCATCTCAGA AGTACTTCAG ACATGGGCCT TGGTAATATA 
    CTAGCCTGAA AAAATGTACC ATGAAGCTAA TATGTGGAGT GGAAAACCAA 
    CTTACTGGCA GCTCACAAGT CTTCAGGCGT TTTGGCCTGG TCTGCAGGTT 
    CTTGTTGGAG ATATTGCAGC TGCAAATTCA TCGCATCGTG AGTTTTTCCA 
    TGTATGGGAA AAGTTTGGTG TATTACCTGA GAGGTATCTA CTCGATCATC 
    AAATAATACA TCCGACAATG AAGTACTATC CACTACGTCC TGAATTAGCA 
    GAATCCACGT TCTACCTTTA CCAAGCTACA AAAGATCCAT GGTATCTAGA 
    TGTTGGTGAA TCAATGGTAA AATCTCTTAA TCTCTACACA AAGGTGCCAG 
    GGGGATTTGC AAGTGTTAGA GATGTGACGA CCATGCAATT GGAAGATCAT 
    CAGCACAGTT TCTTTCTCGC TGAAACGTGC AAGTACCTAT ATCTCCTCTT 
    CGATGACTCA TTTGTGGCCA AAAGGAATTA TATATTTACA ACCGAGGGCC 
    ATCCTATACA GGTTGTGAGC TCCTGGCATG AGAAACTACC AGAAACTTAT 
    TTCTCAGGCA ACTGGACCCT TTCAAAGAGT GGAGCATGGG AAAGTCGAGC 
    TAGCGCATTG TCACTACAAG TCTGTCCACT GATATCTCTT AACTCTAGAC 
    ATCCTGAGCA ACAAAGAGAG AGTGCTTGCC ATGTTCTTGA CGAGCAAATC 
    AATCATAAGT GTTGGAGCAA CAAAGAGTGC GGAGTTGATG CCACTACTTG 
    TAGACTAAGA ACCTGCAGCG GGGTTGGATA CTGCGGCTTA TGGAATCCCT 
    TATAACTTTT GACACAAAAC AGTGGGGTCT TGGGTTTTAA TAAAGGAAAG 
    AGAAGAGGTG GAGTTTACGA ACTGAAACTG TAAATTAATG CGAAATGACA 
    AGTTTTGGTA GACAGAAAAT GGATAGTTGT TGCATGAGGC TGTTGTATCT 
    TTTTCTTTGA TTCATCAGTC CTGACATGGA TATATAGTTA TATACTATGG 
    GAGGATCAAC CTCGATCAAA GGAATATTAT GTTTTTCTTG TTTTTTTCTT 
    GACGTATAGC TTTATGCCTT TATCAAATGG TAATTCTAGG ACCTTAACAG 
    ATAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT1G27520.1 [+] show detail - Glycosyl hydrolase family 47 protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycoside hydrolase, family 47 1.9e-63
    HMMPfam Glycoside hydrolase, family 47 9.2e-48
    FPrintScan Glycoside hydrolase, family 47 2.7e-26
    FPrintScan Glycoside hydrolase, family 47 2.7e-26
    FPrintScan Glycoside hydrolase, family 47 2.7e-26
    FPrintScan Glycoside hydrolase, family 47 1.6e-18
    FPrintScan Glycoside hydrolase, family 47 1.6e-18
    FPrintScan Glycoside hydrolase, family 47 1.6e-18
    HMMPanther MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDAS 5.5e-118
    HMMPanther Glycoside hydrolase, family 47 5.5e-118
    HMMPanther MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDAS 5e-85
    HMMPanther Glycoside hydrolase, family 47 5e-85
    Gene3D Glycoside hydrolase, family 47 1.8e-69
    Gene3D Glycoside hydrolase, family 47 3.1e-49
    superfamily Glycoside hydrolase, family 47 3.5e-70
    superfamily Glycoside hydrolase, family 47 7.9e-49

    See the detailed result >

    AT1G27520.1

    Model type
    Protein coding
    Short Description
    Glycosyl hydrolase family 47 protein
    Computational Description
    Glycosyl hydrolase family 47 protein; FUNCTIONS IN: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, alpha-mannosidase activity, calcium ion binding; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 47 (InterPro:IPR001382); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 47 protein (TAIR:AT5G43710.1); Has 2179 Blast hits to 1853 proteins in 199 species: Archae - 0; Bacteria - 11; Metazoa - 788; Fungi - 990; Plants - 198; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR