F12733

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12733

Determination of introduced cDNA(s)

RAFL09-19-N06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-N06 - Resource: pda05538

full reading [+] show sequence

CTCGCCCACT CTTCTCTTCC GCACCGCTTT TGAAAAACGG CGACGCATTG 
TCTCCATTCA ATCGCCGGAA AATTAGAAGA GAAGATGGCG GCGCCGGAAG 
CTCCGGTTAA GTACGTCGGA ATATGTAAGG ATTCCGCCGC TTTCAAGCTT 
ATGAAATCGA TGGGTTGGGA AGAAGGAGAA GGACTTGGTA AAGATAAGCA 
AGGTATCAAA GGTTATGTGA GAGTTACGAA CAAACAAGAT ACATCTGGTG 
TTGGTCTTGA TAAGCCAAAT CCATGGGCAT TTGATACAAC TCAGTTCGAT 
AACATTCTCA AGAAATTGAA AGTGCAAGCT GCTCCTACCA AGACTAGCAA 
GAATGATGAT GATTCAGATA AGGAAGATGA AAGTGAAGAT GATGCTGTCA 
AATCTGAGCC TGCCAAGTTG AAGACCGTTG CTAAAGTCAC TCGTCCACAA 
GGAAGGTATA AACGTAGAGA GAAAGGGAAG CTTGTCAATT CATACTCGTC 
TAAAGATCTT GAAGGAATAC TGGTTAAGCG AACTGAGGAT CCTTCTCCTG 
CAGTTTGTGA CATAGCCGAT TCTATGGATA TTGAAATTAT ATCTGAGGAC 
CAAGATGCTA GTATTAAAGA ACAGAAAATT GAAGAACCTT CTTCGAACTG 
GTGGGGATTT AAATCCGGGT TTGTCTCGGG TGGTCTTCTG GGGGCCAAGT 
CGGGCAAAAA GAAATTAAAA GCTAGCGAGA GAAAAATGTT TAGTGAGAAT 
GATCAAGAGA ATCTTTACAA CATGGTTCAG GATAAAGCCA CAGCGGGAAA 
ACAAGGACTG GGTATCAAAG ACCGGCCAAA GAAAATAGCT GGTGTTCGTT 
ACGAAGGGAA GAAAACCTCT TTTGATAACA GTGATGATGA TGATGATGAT 
GATGATGATG ATGACGAAGA AGACGAAGAG GAAGATGAAG ACGAGAGTGA 
AGCAGATGAT GATGACAAGG ACTCTGTAAT TGAAAGTTCT CTTCCCGCGA 
AAAGGAAGCA CGATGAAATC ATTGAACCCA AAATCAAGTT AAAGAACCTG 
TGCAAGCAGA TTGTTAAAAA GGATGCTGGT AAAGGTGGAT TCATGAAGCT 
GAAACAGCTA AAATCTCTGA TCGATGAACA AGCACCATCA GTTCTTTCAG 
AGTTTTCTTC AAGAAAAGAT GCTATTGCTT ACTTGAAACT TAAGCTGGAG 
CGAAGTGGCA AGTTTGTTGT GGAGGGAAAG AAGATTAGTC TTGTATCAAG 
CAAGAAGTGA GCGAGAATTT TTGGTTGGAA TTATCATTAT ACCTGCATAG 
GAAAGTGGAG ATTAGGACAA GTTTTGTTAC TAAATCATCA CAATGCCATA 
TGTAAACAAA GATCATACTT CAGTTTGGAA AATTTTGATT TGATTGTAAT 
CTATTTTTAC ATTCTATTAG AGTTTGCATA AAACTTCACC CTAATAAGTT 
ACTCTCTTAT ATTTGGAACC

Gene models with high sequence identity

AT1G63980.1 [+] show detail - D111/G-patch domain-containing protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	D111/G-patch	1.4e-11
HMMPfam	D111/G-patch	2.9e-14
HMMPanther	PIN2-INTERACTING PROTEIN X1 (PINX1) (LIVER- R	8e-11
HMMPanther	G PATCH DOMAIN CONTAINING PROTEIN	8e-11
ProfileScan	D111/G-patch	14.528

See the detailed result >

AT1G63980.1

Model type: Protein coding
Short Description: D111/G-patch domain-containing protein
Computational Description: D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); Has 18077 Blast hits to 9113 proteins in 508 species: Archae - 9; Bacteria - 1331; Metazoa - 6165; Fungi - 2709; Plants - 1373; Viruses - 248; Other Eukaryotes - 6242 (source: NCBI BLink).
Link: InterPro Scan - TAIR