F12803

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12803

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F12803

Determination of introduced cDNA(s)

  • RAFL09-83-B22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-83-B22 - Resource: pda08892

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-83-B22 - full reading 
    GGTCTCACTG AAACTGTGAA AATTTTATCT CTTTTATAGA TAAAGAATCT 
    TGCTTTTTTC AGTTTTCAGT ATGAAGAAGA ATTGAAGAGA GTGTCCGAGG 
    AAGGAGACCT TTGGTTTCAG TTTGTGAGTC TTGTTGTAAT GGCTTTATCA 
    ATGGAGTTTG GGTTTTCAAT TGGGTCATGC TTCAAGGCAC CAAACCCACC 
    TGTTCTAATC TCTGCAAGCC CTAATAAGAT CAATTTCACG TTGAGAAGGA 
    GAAAGAAAAG ATTCTTACTT AGAGTCTCTG CTGTGTCGTA TAAGGAATTC 
    GCAGAGTCTG CTTTAGAAGA AACCAGGAAA AGGATCGTTC TTGAACCTTC 
    ACATCTCCAG GAAAAGTATA GTAGCATGAC AGGACTAGAT GGTAAGACCG 
    AACTTCAAAT GCTTGCTTTT AAATCTTCAA AGATTAGACT CTTGAGGAGT 
    ATGGCAATAG AGAATGAGAC AATGCAGGTC TTTGACTTTG CGGGTTTCAT 
    GGAGCCTGAG TATGATACTC CCATATTCTG TGCTAACTTT TTCACATCTA 
    CCAACGTTAA CATAGTTGTA TTGGACCTTA ATCCTTTGCA TCAGTTGACT 
    GACCAGACGG ATTACCAAGA CAAGTATTAT AACAAGATAA TGTCCATATA 
    TCACAAATAT GCTGAGACTT TCCCATGGGG AGGGAAATTG ACTGGTGAAT 
    CCATAAAGTT TTTCTCGCCT TTGGTGATGT GGACTAGGTT TTCGTCTAGC 
    AAAGAAAAAC ATAAGGCTTT GTTCTCTGCG TTTCTAGAGT ACTATCAGGC 
    ATGGCTTGAG ATGACAATCC AAGTGAGGGA GGAGATGGAA CCATCTCATG 
    TGAGAGCCAA TTGTGAAGCA CAACACAAGT ACCTGACATG GCGAGCACAA 
    AAGGATCCTG GACATGGTCT TCTTAAAAGA TTAGTAGGTG AAGCAAAGGC 
    AAAGGAGCTG CTAAGGGATT TCCTGTTCAA TGGGGTGGAT GAGTTAGGCA 
    CAAAAACATT CATTGATTAC TTTCCAGAGT ACCAAACAGA AGATGGAACT 
    GTAAGCGATA AACGAAGTAT CATTGGGAAG TCATATGAAA CTCGTCCATG 
    GGATTTAACA GGACAATTTA TCGGCTAACA ATGATATATG TGAACAAGTC 
    AGATTTCAGA GTCATCAACA CAAGAGGACG TGAACTTAGG GAAGTAGGAA 
    TAAGAAAGAG CAGCATGAGG AGTCTCTCAG GTCTATCTGC ATTTCAAGAT 
    GATTGTTTGA GTTACCATGC ATTGTAGTTT TACAAGTGTA GCTCTCAGCC 
    CTTCATCAAA ATGAGAATCC TCGAGTATGA TATGATTTTA ATGAAAATGT 
    ATTCGTCT

    Gene models with high sequence identity

    1. AT3G09150.2 [+] show detail - phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G09150.2

    Model type
    Protein coding
    Short Description
    phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
    Curator Summary
    Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.
    Computational Description
    ELONGATED HYPOCOTYL 2 (HY2); CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 407 Blast hits to 407 proteins in 62 species: Archae - 0; Bacteria - 187; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR