F12804

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12804

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12804

Determination of introduced cDNA(s)

  • RAFL06-14-K01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-14-K01 - Resource: pdz87595

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-14-K01 - 5 prime EST 
    GACCTATCTC ACTCTAAAAT CTCTCTCTGC CAATCTCATC TTCAACCTCT 
    CTCTAACTCT CGTTTTCGAT TCTACAATGG CTGACAAGAA GATTAGGATC 
    GGAATCAACG GATTCGGAAG AATTGGTCGT TTGGTTGCTA GAGTTGTTCT 
    CCAGAGGGAC GATGTTGAGC TCGTCGCTGT CAACGACCCC TTCATCACTA 
    CTGAGTACAT GACCTACATG TTCAAGTACG ACAGTGTTCA CGGTCAATGG 
    AAACACAATG AACTCAAGAT CAAGGATGAG AAGACCCTTC TCTTCGGTGA 
    GAAGCCAGTC ACTGTTTTCG GCATCAGGAA CCCTGAGGAT ATCCCATGGG 
    CCGAGGCTGG AGCTGACTAC GTTGTTGAGT CTACTGGTGT CTTCACTGAC 
    AAAGACAAGG CTGCAGCTCA CTTGAAGGGT GGTGCCAAGA AGGTTGTTAT 
    CTCTGCCCCC AGCAAAGACG CTCCAATGTT TGTTGTTGGT GTCAACGAGC 
    ACGAATACAA GTCCGACCTT GACATTGTCT CCAACGCTAG CTGCACCACT 
    AACTGCCTTG CTCCCCTTGC CAAGGTTATC AATGACAGAT TTGGAATTGT 
    TGAGGGTCTT ATGACTACAG TCCACTCAAT CACTGCTACT CAGAAGACTG 
    TTGATGGGCC TTCAATGAA

    Gene models with high sequence identity

    1. AT3G04120.1 [+] show detail - glyceraldehyde-3-phosphate dehydrogenase C subunit 1
      E-value: 0; Score: 100.00

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-14-K01 - 3 prime EST 
    AAAACCATAA CGTTAACTCA ATATATCAAA AGCCAAAAAC AAAGGGCCTT 
    CCAGTAAAAC ATCGGTCTAC AAACTCCCAT CACCTCACAT GAATGAGAAT 
    TAAGAAAACC AAAAAAAAAA AAAGTTCCAA GTTCAAAGAA ATTTTATTCG 
    AAAACGACAA ATTCAGACCA TAAAAGGGGA TGAACAGATG ACTTTCCACT 
    CCCTATCATT CGAGATCTGC TTCTTAGCTT AGGCCTTTGA CATGTGGACG 
    ATCAAGTCGA CCACACGGGA ACTGTAACCC CATTCGTTGT CGTACCATGA 
    CACCAATTTC ACAAACTTGT CGCTCAATGC AATTCCAGCC TTGGCGTCAA 
    AAATGCTCGA CCTGTTGTCG CCAACGAAGT CAGTTGA

    Gene models with high sequence identity

    1. AT3G04120.1 [+] show detail - glyceraldehyde-3-phosphate dehydrogenase C subunit 1
      E-value: 0; Score: 99.74

    AT3G04120.1

    Model type
    Protein coding
    Short Description
    glyceraldehyde-3-phosphate dehydrogenase C subunit 1
    Curator Summary
    encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced by ROS.
    Computational Description
    glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (GAPC1); FUNCTIONS IN: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, copper ion binding, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: in 11 processes; LOCATED IN: in 8 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase C2 (TAIR:AT1G13440.1); Has 25372 Blast hits to 25360 proteins in 6350 species: Archae - 71; Bacteria - 10995; Metazoa - 2358; Fungi - 2851; Plants - 3864; Viruses - 0; Other Eukaryotes - 5233 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR