F12811

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12811

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12811

Determination of introduced cDNA(s)

  • RAFL06-74-J22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-74-J22 - Resource: pda09453

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-74-J22 - full reading 
    GTCACATTTC TTTAACTTAA AAACTCTCCC GTTTCGCCGA AGCTTCTTCA 
    ATGGCGATTT CTCTCGCCAC CGCCTATATC TCTCCATGTT TTACACCGGA 
    ATCGTCTAAT TCCGCTTCAC CATCACGAAC TCTTTCCTCC GTACGATTAC 
    CTTCTCAGAT TCGCCGATTC GGAAGTGTTC AATCGCCGTC TTCGTCTACT 
    CGCTTCGCTC CACTCACTGT AAGAGCAGCA AAGAAGCAAA CTTTCAACTC 
    TTTTGATGAT TTGTTGCAGA ACTCTGATAA ACCTGTACTT GTAGACTTCT 
    ATGCTACTTG GTGTGGTCCA TGTCAGCTTA TGGTACCTAT ACTCAATGAA 
    GTGAGTGAAA CACTGAAAGA TATAATTGCA GTTGTGAAAA TTGATACTGA 
    GAAGTACCCA AGTCTTGCTA ACAAATACCA GATTGAGGCT TTGCCCACAT 
    TCATCTTATT CAAAGACGGC AAACTCTGGG ACCGTTTCGA GGGTGCCTTG 
    CCAGCGAACC AACTCGTTGA GCGTATTGAG AATTCTTTGC AAGTGAAACA 
    GTAGGTTTGA GAAACCAAGA ATACTTGTCA TCTATGAACA ATCTGTTGTG 
    ACATAAGCCA TTGTTGATTG TTTGCTCGGT ATAATCATCT ACCTATTCAT 
    ATATGGCATC TGCCATTTTT CTC

    Gene models with high sequence identity

    1. AT1G43560.1 [+] show detail - thioredoxin Y2
      E-value: 0; Score: 99.85

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Thioredoxin 3.7e-41
    PatternScan Thioredoxin, conserved site 0
    superfamily Thioredoxin-like fold 1.1e-34
    ProfileScan Thioredoxin-like 16.135
    FPrintScan Thioredoxin-like subdomain 0.00000017
    FPrintScan Thioredoxin-like subdomain 0.00000017
    FPrintScan Thioredoxin-like subdomain 0.00000017
    Gene3D Thioredoxin fold 2.4e-32
    HMMPanther THIOREDOXIN M(MITOCHONDRIAL)-TYPE 2.5e-34
    HMMPanther Thioredoxin, core 2.5e-34
    HMMPfam Thioredoxin domain 5.6e-30

    See the detailed result >

    AT1G43560.1

    Model type
    Protein coding
    Short Description
    thioredoxin Y2
    Computational Description
    thioredoxin Y2 (ty2); FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: glycerol ether metabolic process, cell redox homeostasis; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin Y1 (TAIR:AT1G76760.1); Has 23180 Blast hits to 21538 proteins in 3021 species: Archae - 298; Bacteria - 11849; Metazoa - 3466; Fungi - 1262; Plants - 2020; Viruses - 15; Other Eukaryotes - 4270 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR