F12812

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12812

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12812

Determination of introduced cDNA(s)

  • RAFL04-14-D08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-14-D08 - Resource: pda00484

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-14-D08 - full reading
    AAGGAAAAGG CAATGCAAGA AGAAGCTTAA ATCTCTCTTC TCTGCTCCTG 
    AAGTCTGTTC ATGGCGATGT CGGGAACTTT CCATTTGACT TCTGACTATG
    TCCCTGGTTA CACACTTTCA GACAGCCGTT GCTTCTTTAA CTCTGCTGTT
    TCAAGAAGAA CACTTGCCAT ATTACCTTGC TCTTCCTGTC TCGATCACAA
    GAATGGGCGT CTGAAATCTG TCCCCAATAG AAGTTCTTTT GTGTGCCGAG
    CAAGTTCTGG CGGCTATAGG AGAAATCCTG ATTTCTCAAG ACTTAATAAG
    CATGGTTACC GGGGAAACAA CAGGCAAAGC GGAGGGAGAG AAGATTTTGA
    TATCGAAAAC TCTGATATGT TGTCTTCAAG AAATGGGCCT TTATTCAACC
    TGTCTAGTTC CCCCAAATTC CAAGCTACCT CATCCCCTGG ACCTAGAGAG
    AAAGAGATCG TGGAGCTTTT CAGAAAGGTT CAAGCTCAGC TCCGAGCTCG
    TGCTGCAGCA AAGAAAGAAG AAAAAAAGAT TGAAGAAGCT TCTAAAGGGC
    AGGGAAAAGA AAGTGAAACT GTTGACTCTC TTCTTAAGTT ACTAAGGAAG
    CACTCGGGAG AGCAAAGCAA GAGGCAAGTT AGCAAATTTA GCAGCCAGGG
    AGAAGTACAA GGAGATACTG TTGACAAACA AGATCGCACC GGAAATCTTG
    TCACTTCAGG GAACAAAGAT AATAATGCAT CATCCTTTAC CAGACCAACA
    TCAAGCTTCA GAAGAAAGTC GCCAGTACCA AGATCTCAAT CACCGCCAGC
    TTATTCTAGC GAGGCAACTT TTGATCAATC ATCAAGTTAC AGTGTAACCT
    GGACCCAGAA GAAGGATACA GTAGAGTTGC ATGATGAGCC TGAACATGAG
    CCTGCGTATG AGCATGAGCA TGAGCCTGAA AATGAGTCAG AACCTGGGCC
    TGTGACAACT ATGCTTGAAC CAGATTCAGA GCTGAAACCA GAGTCATCAT
    CATTTTATCA AGAGGAGGAG GATGATGATG TTACTTTTGA TGTGTTATCA
    CAGGATGATG GTATTTTAGA TGTGTTATCA GATGATGATG AGTCTCTCGA
    TGATGCTGAT GAAGATAGTG ATGAAGCTGA GGAAGAAGCC GTGAAAGACT
    TGAGTGAATT GAAGCTGGTC GAACTTAGAG GCATAGCAAA GTCACGGGGA
    CTAAAAGGGT TGTCAAAGAT GAAGAAAGCC GAATTAGTGG AGTTGCTTGG
    TAGTGATTCC AGCTGAACCT TGCTCTAGTA TGCACCAGTT AAAATGAGTT
    ACTTTCTCTG TATTTTGTTT GTTTGGAAAA TGCTGGCTTT GATGTTCTTG
    ATTTACTAGG ATTACCTTCT TCTCTTTTAA GTTATTATTA TTACACTGAT
    GTACCTTGTC AACTACAGTT TTCAGGACGC ATTATTTACT GTTCAATCAT
    ATGGATTTTC AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT1G06190.1 [+] show detail - Rho termination factor
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PLASMA MEMBRANE PROTON-ATPASE 3.9e-77
    HMMPanther ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 3.9e-77
    Coil coiled-coil 0
    HMMPfam Rho termination factor, N-terminal 0.00000027

    See the detailed result >

    AT1G06190.1

    Model type
    Protein coding
    Short Description
    Rho termination factor
    Computational Description
    Rho termination factor; FUNCTIONS IN: transcription termination factor activity, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding; INVOLVED IN: transcription termination, ATP biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rho termination factor, N-terminal (InterPro:IPR011112), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757); BEST Arabidopsis thaliana protein match is: ATP binding;ATPases, coupled to transmembrane movement of ions, phosphorylative mechanism (TAIR:AT2G31150.1); Has 1888 Blast hits to 1636 proteins in 313 species: Archae - 6; Bacteria - 275; Metazoa - 547; Fungi - 247; Plants - 133; Viruses - 50; Other Eukaryotes - 630 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR