F12816

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12816

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12816

Determination of introduced cDNA(s)

  • RAFL06-70-D22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-70-D22 - Resource: pda07646

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-70-D22 - full reading 
    AAAAATAAAA CGAATTTTTG CAGTGGCGAA GCTTGGAGCC TCTTTCATGT 
    GATGGCCTTG AACTTCTTCT CCACTTCTCT TCACCCAATT TCAAACCCAT 
    CTTCTTCCTC TCGATCCAAA CAGAGCCATC ATCTCCTTCT GCAACTCTCT 
    TCTCCTCCAG CAACACGTGT CCGCTCCGAG CGAAGTGAAA TCGGCGTCAC 
    TGACGACAAC AACAACAACA ACGATACTTC TTCGTCTTCT TTCTCCGGTT 
    CTTCGTCTTC TTCATCAGTA CGCACACAAC TAGATCTCCT TGAGCAGCTA 
    ACTTCAACAA GTGATGGGTA CTTAAGTGAT GGTGGTGGCT CAAGAGGACT 
    CACTATTCGT GACCAATTGG CTGGACTTGT TGGTGACAGA GACGATGATT 
    TCAGCATTCC CTTAGGCAAG AACTTAAAGA AAGTGAGTCC TAAATTCTTA 
    ACGATATCTC AGAAAAGGAA CATTAAGAGA CAAAGCTACC TTAATGAGGT 
    CTCTCAGAGG AATGATTCTG TTTTCTTTGC TACTATTGGC GCCTTTGTAA 
    TCCTTCCTCC TTTGGTCATT CTAGCTATTG CTATCTTAAC TGGCTATGTT 
    CAACTCTTCC CTTAAGTATA AATTTATATA CTTTGTCAAA TTTGCATATA 
    GCAGGAGTTG CTTGTATTCA GAAATCAGAT TGTCCAATGA TAAATATAGG 
    TTGATCTTTT CTTCGAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT2G42975.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 0; Score: 99.86

     

    InterPro Scan Digest

    See the detailed result >

    AT2G42975.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR