F12817

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12817

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12817

Determination of introduced cDNA(s)

  • RAFL16-95-M21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-95-M21 - Resource: pda10407

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-95-M21 - full reading 
    ATCTGCAGGA GTGAATCGCA AAACCAAATT TGGAGGATTC TTTCTGAGGG 
    GTTTCTCAGT GAGAAAATGG CTTCGAAACG GATCTTGAAG GAGCTGAAGG 
    ATCTCCAGAA AGACCCTCCA ACCTCCTGCA GTGCAGGTCC AGTTGCTGAA 
    GACATGTTTC ATTGGCAAGC TACAATTATG GGTCCTGCAG AGAGTCCGTA 
    TTCAGGCGGT GTGTTTCTCG TTACCATTCA CTTCCCTCCG GACTATCCAT 
    TCAAACCACC AAAGGTTGCA TTTAGGACGA AGGTGTTTCA CCCTAATATC 
    AACAGCAACG GAAGCATTTG CCTTGACATT TTGAAAGAAC AATGGAGCCC 
    TGCCCTCACC ATTTCCAAGG TGTTGCTCTC GATATGTTCG CTGTTAACAG 
    ATCCAAATCC AGATGACCCT TTGGTACCAG AGATTGCACA CATGTACAAA 
    ACCGACAGAG CCAAATACGA GGCTACTGCA AGAAACTGGA CTCAGAAGTA 
    TGCCATGGGC TAAACAAAGA TTCGTATGCT TCAGCACCTG TTTATGTTTT 
    CATGTCTGTT TCTTTCTTCT TCTTGTTTTA ACTTTAATAA AAATGTCTAA 
    AATATCAACT TTTTCGTCTG TACTATATAT GTTTATGGGT TTTATTATCA 
    TCATCTTTAT CTGAAATTTG AAGATGGAAT TCTAAAGCTT GAAGGTTATT 
    TGTTAAAGTT TATTTACTAG TGAGTGATGA GAAACATTGT GTTGTTGTTC 
    ATTTCATTTT TTCTTTGTCA GGAATATTCA TTGACTTGTT TTCTTTAAAA 
    AAAAAAAAAA AAAAAAATGA GGTTCTCGAG AACCGCTCAC ACAAAAACGT 
    TTTCGAAATC CCTAATCTAC TCTCTCTTCT CTATATCTCT ACTCTTGAGA 
    AATGGCTCTT AGAACTGTGC TCGTCTCCGA CGTCCCTAGC CTCCCGGATT 
    CTGTCTACGG TTTATCCGAA GGTTTAGAGT TGAGCAAACC GACGTCGTTT 
    AGGTTACCGG GGTTTTCGGT GATTGGACAT AGAGGAATCG GTATGAATGT 
    GTTGCAATCG TCTGATCGGA GAGCGAGAGG TGTTAAAGAA AACTCGATTC 
    TTTCATTCAA TTCCGCCGCT AAGTATCCGA TTGATTTCAT TGAGTTCGAT 
    GTTCAGGTGA CAAAAGATGA TTGCCCTGTC ATTTTCCATG ATGATTTCAT 
    CTACTCTGAA GAAAATGGTA TTGTTAATGA GAGTAGAGTG ACGGATCTGA 
    GTCTGTCTGA GTTTCTCCTT TATGGACCTC AGAAGGAAAC TGAGAAAATA 
    GGGAAGACAC TGATGAGGAA ATCTAAAGAA GGGAAGGTTT TGAAATGGGA 
    CGTTGATTTG GATGATTCTC TTTGTACGTT GCAAGAAGCT TTTGAACAAG 
    TTGAACAAAC TCTTGGGTTC AATATCGAGT TGAAATTTGA TGATCAGACC 
    GTCTATGAAC GAGAGTTTCT TGTCCATATC CTGAGATCAG TACTACAGGT 
    GGTCTCTAAT TATGCTAAAG ACAGACCAGT AATCTTCTCA AGTTTCCAAC 
    CAGATGCAGC TAAGCTTGTT AGGGAACTGC AGAGCACTTA CCCTGTTTTC 
    TTTCTGACTG ATGCGGGAAA CGAGATTCAC AATGACGAGA GAAGAAACTC 
    GCTCGAAGAA GCCATTCAAG TTTGCTTGGA AGGAGGTCTT CAAGGTATTG 
    TTTCAGAGGT AAAAGGAGTG TTCAGGAACC CAGCAGCCAT TAGCAAGATC 
    AAAGAATCTA ACCTCTCTCT CCTCACATAC GGCAAACTCA ACAATGTCGG 
    AGAGGCAGTG TACATGCAAT ATGTGATGGG GATCGATGGA GTGATTGTAG 
    ATTTTGTTGA GGAGATTATA GAGTCCACGA CACGCATGAT GATAAGACCA 
    CCACCATCAT CATCACCATT ACCATCACCT TCCAAGGATG ATGATGTTGC 
    CATTACAAGA CCTGAGTTTT CACAGAAGGA GATTTCTTTT CTTCTCAAGC 
    TTCTCTCTCA GTTGATACAA CATTGATATC TCTGTTTTTT CGTTTTCTTT 
    TATCCCAAGT TTCTTTTTAG GGTTTGATTT TCTTATTGAT TTAATTATTA 
    TTCTGGGTGT ATTACCCAAT AGTTGGAATT GTAAATAATT ATAAATTTAT 
    TTCTTTT

    Gene models with high sequence identity

    1. AT5G41080.1 [+] show detail - PLC-like phosphodiesterases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Ubiquitin-conjugating enzyme, E2 4.7e-80
    HMMPanther RELATED TO MULTIFUNCTIONAL CYCLIN-DEPENDENT K 5.7e-84
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 6e-109
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 6e-109
    Gene3D Ubiquitin-conjugating enzyme/RWD-like 6.6e-61
    Gene3D PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 1.1e-35
    PatternScan Ubiquitin-conjugating enzyme, E2 0
    Coil coiled-coil 0
    superfamily Ubiquitin-conjugating enzyme/RWD-like 5.1e-68
    superfamily PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 2.2e-39
    ProfileScan Ubiquitin-conjugating enzyme, E2 48.492
    HMMPfam Ubiquitin-conjugating enzyme, E2 2.1e-52
    HMMPfam Glycerophosphoryl diester phosphodiesterase 1.7e-53

    See the detailed result >

    AT5G41080.1

    Model type
    Protein coding
    Short Description
    PLC-like phosphodiesterases superfamily protein
    Computational Description
    PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: senescence-related gene 3 (TAIR:AT3G02040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR