F12817

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12817

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12817

Determination of introduced cDNA(s)

  • RAFL16-95-M21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-95-M21 - Resource: pda10407

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-95-M21 - full reading
    ATCTGCAGGA GTGAATCGCA AAACCAAATT TGGAGGATTC TTTCTGAGGG 
    GTTTCTCAGT GAGAAAATGG CTTCGAAACG GATCTTGAAG GAGCTGAAGG
    ATCTCCAGAA AGACCCTCCA ACCTCCTGCA GTGCAGGTCC AGTTGCTGAA
    GACATGTTTC ATTGGCAAGC TACAATTATG GGTCCTGCAG AGAGTCCGTA
    TTCAGGCGGT GTGTTTCTCG TTACCATTCA CTTCCCTCCG GACTATCCAT
    TCAAACCACC AAAGGTTGCA TTTAGGACGA AGGTGTTTCA CCCTAATATC
    AACAGCAACG GAAGCATTTG CCTTGACATT TTGAAAGAAC AATGGAGCCC
    TGCCCTCACC ATTTCCAAGG TGTTGCTCTC GATATGTTCG CTGTTAACAG
    ATCCAAATCC AGATGACCCT TTGGTACCAG AGATTGCACA CATGTACAAA
    ACCGACAGAG CCAAATACGA GGCTACTGCA AGAAACTGGA CTCAGAAGTA
    TGCCATGGGC TAAACAAAGA TTCGTATGCT TCAGCACCTG TTTATGTTTT
    CATGTCTGTT TCTTTCTTCT TCTTGTTTTA ACTTTAATAA AAATGTCTAA
    AATATCAACT TTTTCGTCTG TACTATATAT GTTTATGGGT TTTATTATCA
    TCATCTTTAT CTGAAATTTG AAGATGGAAT TCTAAAGCTT GAAGGTTATT
    TGTTAAAGTT TATTTACTAG TGAGTGATGA GAAACATTGT GTTGTTGTTC
    ATTTCATTTT TTCTTTGTCA GGAATATTCA TTGACTTGTT TTCTTTAAAA
    AAAAAAAAAA AAAAAAATGA GGTTCTCGAG AACCGCTCAC ACAAAAACGT
    TTTCGAAATC CCTAATCTAC TCTCTCTTCT CTATATCTCT ACTCTTGAGA
    AATGGCTCTT AGAACTGTGC TCGTCTCCGA CGTCCCTAGC CTCCCGGATT
    CTGTCTACGG TTTATCCGAA GGTTTAGAGT TGAGCAAACC GACGTCGTTT
    AGGTTACCGG GGTTTTCGGT GATTGGACAT AGAGGAATCG GTATGAATGT
    GTTGCAATCG TCTGATCGGA GAGCGAGAGG TGTTAAAGAA AACTCGATTC
    TTTCATTCAA TTCCGCCGCT AAGTATCCGA TTGATTTCAT TGAGTTCGAT
    GTTCAGGTGA CAAAAGATGA TTGCCCTGTC ATTTTCCATG ATGATTTCAT
    CTACTCTGAA GAAAATGGTA TTGTTAATGA GAGTAGAGTG ACGGATCTGA
    GTCTGTCTGA GTTTCTCCTT TATGGACCTC AGAAGGAAAC TGAGAAAATA
    GGGAAGACAC TGATGAGGAA ATCTAAAGAA GGGAAGGTTT TGAAATGGGA
    CGTTGATTTG GATGATTCTC TTTGTACGTT GCAAGAAGCT TTTGAACAAG
    TTGAACAAAC TCTTGGGTTC AATATCGAGT TGAAATTTGA TGATCAGACC
    GTCTATGAAC GAGAGTTTCT TGTCCATATC CTGAGATCAG TACTACAGGT
    GGTCTCTAAT TATGCTAAAG ACAGACCAGT AATCTTCTCA AGTTTCCAAC
    CAGATGCAGC TAAGCTTGTT AGGGAACTGC AGAGCACTTA CCCTGTTTTC
    TTTCTGACTG ATGCGGGAAA CGAGATTCAC AATGACGAGA GAAGAAACTC
    GCTCGAAGAA GCCATTCAAG TTTGCTTGGA AGGAGGTCTT CAAGGTATTG
    TTTCAGAGGT AAAAGGAGTG TTCAGGAACC CAGCAGCCAT TAGCAAGATC
    AAAGAATCTA ACCTCTCTCT CCTCACATAC GGCAAACTCA ACAATGTCGG
    AGAGGCAGTG TACATGCAAT ATGTGATGGG GATCGATGGA GTGATTGTAG
    ATTTTGTTGA GGAGATTATA GAGTCCACGA CACGCATGAT GATAAGACCA
    CCACCATCAT CATCACCATT ACCATCACCT TCCAAGGATG ATGATGTTGC
    CATTACAAGA CCTGAGTTTT CACAGAAGGA GATTTCTTTT CTTCTCAAGC
    TTCTCTCTCA GTTGATACAA CATTGATATC TCTGTTTTTT CGTTTTCTTT
    TATCCCAAGT TTCTTTTTAG GGTTTGATTT TCTTATTGAT TTAATTATTA
    TTCTGGGTGT ATTACCCAAT AGTTGGAATT GTAAATAATT ATAAATTTAT
    TTCTTTT

    Gene models with high sequence identity

    1. AT5G41080.1 [+] show detail - PLC-like phosphodiesterases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Ubiquitin-conjugating enzyme, E2 4.7e-80
    HMMPanther RELATED TO MULTIFUNCTIONAL CYCLIN-DEPENDENT K 5.7e-84
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 6e-109
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 6e-109
    Gene3D Ubiquitin-conjugating enzyme/RWD-like 6.6e-61
    Gene3D PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 1.1e-35
    PatternScan Ubiquitin-conjugating enzyme, E2 0
    Coil coiled-coil 0
    superfamily Ubiquitin-conjugating enzyme/RWD-like 5.1e-68
    superfamily PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 2.2e-39
    ProfileScan Ubiquitin-conjugating enzyme, E2 48.492
    HMMPfam Ubiquitin-conjugating enzyme, E2 2.1e-52
    HMMPfam Glycerophosphoryl diester phosphodiesterase 1.7e-53

    See the detailed result >

    AT5G41080.1

    Model type
    Protein coding
    Short Description
    PLC-like phosphodiesterases superfamily protein
    Computational Description
    PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: senescence-related gene 3 (TAIR:AT3G02040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR