F12818

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12818

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12818

Determination of introduced cDNA(s)

  • RAFL05-01-I24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-01-I24 - Resource: pda00702

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-01-I24 - full reading 
    GCCACTGAAC ACTATCGATC TAATCTTTTC AGCTCTCTCC ATCGTCGTCG 
    TATCTGTGAC TCTCGTGATC ATCGCCTGAA AAAAATTTGA GATAATGGCC 
    AGAAAGTTCT TCGTCGGAGG CAACTGGAAA TGTAACGGAA CTGCTGAGGA 
    GGTGAAGAAG ATTGTGAACA CTCTTAATGA AGCTCAGGTT CCTTCACAGG 
    ATGTTGTAGA GGTTGTGGTT AGCCCTCCAT ATGTTTTTCT TCCCCTGGTT 
    AAGAGCACAT TGAGGTCTGA CTTTTTTGTT GCGGCACAAA ACTGTTGGGT 
    TAAGAAAGGA GGTGCTTTCA CTGGTGAAGT GAGTGCGGAG ATGCTTGTGA 
    ACTTGGATAT TCCATGGGTT ATCCTTGGTC ACTCTGAAAG GAGGGCAATC 
    CTTAATGAAT CAAGCGAGTT CGTCGGAGAC AAGGTTGCCT ATGCACTTGC 
    TCAAGGTTTG AAAGTGATTG CTTGTGTTGG TGAGACTCTT GAGGAGCGGG 
    AAGCTGGATC GACCATGGAT GTTGTGGCTG CCCAGACCAA GGCTATTGCC 
    GATCGGGTGA CAAACTGGTC AAATGTTGTC ATAGCCTATG AACCAGTGTG 
    GGCCATTGGA ACCGGAAAGG TCGCTAGCCC AGCCCAAGCT CAAGAAGTAC 
    ACGATGAGCT GAGGAAATGG CTGGCCAAGA ACGTGAGTGC TGATGTCGCT 
    GCTACAACCC GCATCATTTA TGGAGGATCC GTCAATGGTG GTAACTGCAA 
    GGAGCTAGGT GGACAGGCCG ATGTTGATGG TTTCTTGGTC GGTGGTGCTT 
    CTCTAAAGCC TGAGTTTATC GACATCATTA AGGCCGCAGA GGTGAAGAAA 
    AGTGCCTAAT GAGCTCATTA AGCAATTTAA AAGTCCTTTG CTTTTCCAGT 
    CGCAACTCTG AAAAAATGAA TAAGTTGGTA TTATGATATG ATACATTTTG 
    CTTCAGTTGT ATTTGGCAAA AGTTTCTCTC TTACTATATT GTTTTGAGAA 
    CGCAACAATC ATTTTCTTCG CCATTTATTT AGCTGTGGAC TTGCAATTTG 
    CAAATCCCTT CCTTTTGC

    Gene models with high sequence identity

    1. AT3G55440.1 [+] show detail - triosephosphate isomerase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Triosephosphate isomerase, active site 0
    HMMPanther Triosephosphate isomerase 5.9e-160
    ProfileScan Triosephosphate isomerase 81.587
    superfamily Triosephosphate isomerase 9e-97
    HMMTigr Triosephosphate isomerase 3.2e-131
    Gene3D Aldolase-type TIM barrel 4.6e-91
    HMMPfam Triosephosphate isomerase 6.3e-88

    See the detailed result >

    AT3G55440.1

    Model type
    Protein coding
    Short Description
    triosephosphate isomerase
    Curator Summary
    Encodes triosephosphate isomerase.
    Computational Description
    triosephosphate isomerase (TPI); FUNCTIONS IN: triose-phosphate isomerase activity, copper ion binding; INVOLVED IN: in 7 processes; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Triosephosphate isomerase, active site (InterPro:IPR020861), Aldolase-type TIM barrel (InterPro:IPR013785), Triosephosphate isomerase (InterPro:IPR000652); BEST Arabidopsis thaliana protein match is: triosephosphate isomerase (TAIR:AT2G21170.1); Has 11466 Blast hits to 11464 proteins in 3595 species: Archae - 48; Bacteria - 6204; Metazoa - 1205; Fungi - 243; Plants - 477; Viruses - 0; Other Eukaryotes - 3289 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR