F12818

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12818

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12818

Determination of introduced cDNA(s)

  • RAFL05-01-I24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-01-I24 - Resource: pda00702

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-01-I24 - full reading
    GCCACTGAAC ACTATCGATC TAATCTTTTC AGCTCTCTCC ATCGTCGTCG 
    TATCTGTGAC TCTCGTGATC ATCGCCTGAA AAAAATTTGA GATAATGGCC
    AGAAAGTTCT TCGTCGGAGG CAACTGGAAA TGTAACGGAA CTGCTGAGGA
    GGTGAAGAAG ATTGTGAACA CTCTTAATGA AGCTCAGGTT CCTTCACAGG
    ATGTTGTAGA GGTTGTGGTT AGCCCTCCAT ATGTTTTTCT TCCCCTGGTT
    AAGAGCACAT TGAGGTCTGA CTTTTTTGTT GCGGCACAAA ACTGTTGGGT
    TAAGAAAGGA GGTGCTTTCA CTGGTGAAGT GAGTGCGGAG ATGCTTGTGA
    ACTTGGATAT TCCATGGGTT ATCCTTGGTC ACTCTGAAAG GAGGGCAATC
    CTTAATGAAT CAAGCGAGTT CGTCGGAGAC AAGGTTGCCT ATGCACTTGC
    TCAAGGTTTG AAAGTGATTG CTTGTGTTGG TGAGACTCTT GAGGAGCGGG
    AAGCTGGATC GACCATGGAT GTTGTGGCTG CCCAGACCAA GGCTATTGCC
    GATCGGGTGA CAAACTGGTC AAATGTTGTC ATAGCCTATG AACCAGTGTG
    GGCCATTGGA ACCGGAAAGG TCGCTAGCCC AGCCCAAGCT CAAGAAGTAC
    ACGATGAGCT GAGGAAATGG CTGGCCAAGA ACGTGAGTGC TGATGTCGCT
    GCTACAACCC GCATCATTTA TGGAGGATCC GTCAATGGTG GTAACTGCAA
    GGAGCTAGGT GGACAGGCCG ATGTTGATGG TTTCTTGGTC GGTGGTGCTT
    CTCTAAAGCC TGAGTTTATC GACATCATTA AGGCCGCAGA GGTGAAGAAA
    AGTGCCTAAT GAGCTCATTA AGCAATTTAA AAGTCCTTTG CTTTTCCAGT
    CGCAACTCTG AAAAAATGAA TAAGTTGGTA TTATGATATG ATACATTTTG
    CTTCAGTTGT ATTTGGCAAA AGTTTCTCTC TTACTATATT GTTTTGAGAA
    CGCAACAATC ATTTTCTTCG CCATTTATTT AGCTGTGGAC TTGCAATTTG
    CAAATCCCTT CCTTTTGC

    Gene models with high sequence identity

    1. AT3G55440.1 [+] show detail - triosephosphate isomerase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Triosephosphate isomerase, active site 0
    HMMPanther Triosephosphate isomerase 5.9e-160
    ProfileScan Triosephosphate isomerase 81.587
    superfamily Triosephosphate isomerase 9e-97
    HMMTigr Triosephosphate isomerase 3.2e-131
    Gene3D Aldolase-type TIM barrel 4.6e-91
    HMMPfam Triosephosphate isomerase 6.3e-88

    See the detailed result >

    AT3G55440.1

    Model type
    Protein coding
    Short Description
    triosephosphate isomerase
    Curator Summary
    Encodes triosephosphate isomerase.
    Computational Description
    triosephosphate isomerase (TPI); FUNCTIONS IN: triose-phosphate isomerase activity, copper ion binding; INVOLVED IN: in 7 processes; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Triosephosphate isomerase, active site (InterPro:IPR020861), Aldolase-type TIM barrel (InterPro:IPR013785), Triosephosphate isomerase (InterPro:IPR000652); BEST Arabidopsis thaliana protein match is: triosephosphate isomerase (TAIR:AT2G21170.1); Has 11466 Blast hits to 11464 proteins in 3595 species: Archae - 48; Bacteria - 6204; Metazoa - 1205; Fungi - 243; Plants - 477; Viruses - 0; Other Eukaryotes - 3289 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR