F12828

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12828

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12828

Determination of introduced cDNA(s)

  • RAFL06-09-M03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-09-M03 - Resource: pda02957

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-09-M03 - full reading 
    ATCCATCCAT CACTCGCCAA AAACCTTGAA ACCTTTAAAA AATCGAAACT 
    ATGGCTAAGC TCATTCTCGT TTTCGCAACT CTTGCCCTCT TCATCCTCCT 
    AGCCAACGCA TCCATCTACC GCACAGTGGT GGAGTTCGAG GAAGATGATG 
    ACGTGAGCAA CCCACAACAA GGTAAGTGCC AGAGGGAGTT TATGAAGCAT 
    CAGCAACTAA GAGGTTGCAA GCAATGGATC CGCAAGAGAG CTCAACAAGG 
    AAGAATCGGA TACGAAGCTG ATGACTTTGA GCTCACTCTT GATGTCGATC 
    TTGAGGACGA TGAGAACCCA ATGGGGCCTC AACAACAGTC ATCTCTTAAA 
    ATGTGTTGTA ATGAATTAAG GCAAGTGGAC AAGATGTGTG TGTGTCCTAC 
    ACTGAAAAAG GCGGCTCAAC AAGTCAGATT CCAGGGAATG CATGGACAGC 
    AACAGGTGCA ACATGTGTTT CAGACTGCTA AGAACTTGCC TAACGTTTGC 
    AAAATCCCTA CCGTTGGATC CTGCCAGTTC AAGGCATCTC CTTACTAGGA 
    CCATGAAGAG GACCAAACTA TAAAAGCACA CACGTACACA TGGTGGTTTT 
    GTTAATGATA ATAAAAAGTC TCTCTCTTGT GGCGTGTTCG TGTTTGTATA 
    GTAGATAAAT GTTTGTACTG TATGAGTTAG AGTCTTAGTG GCAATATTAC 
    ACCTTCTAGT GTAATGTAAC TTGCCCTACC CCCTTAAATA AAAGATGTTC 
    TTGGGTATC

    Gene models with high sequence identity

    1. AT5G54740.1 [+] show detail - seed storage albumin 5
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Napin/ Bra allergen 2.9e-24
    FPrintScan Napin/ Bra allergen 2.9e-24
    FPrintScan Napin/ Bra allergen 2.9e-24
    FPrintScan Napin/ Bra allergen 2.9e-24
    FPrintScan Napin/ Bra allergen 2.9e-24
    HMMSmart Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 2.2e-05
    HMMPfam Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 2.6e-08
    superfamily Bifunctional inhibitor/plant lipid transfer protein/seed storage 1e-27
    Gene3D Bifunctional trypsin/alpha-amylase inhibitor 5.4e-27

    See the detailed result >

    AT5G54740.1

    Model type
    Protein coding
    Short Description
    seed storage albumin 5
    Computational Description
    seed storage albumin 5 (SESA5); FUNCTIONS IN: lipid binding, nutrient reservoir activity; INVOLVED IN: lipid transport, pollen development; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex; CONTAINS InterPro DOMAIN/s: Bifunctional trypsin/alpha-amylase inhibitor (InterPro:IPR013771), Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Napin/ Bra allergen (InterPro:IPR000617), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: seed storage albumin 3 (TAIR:AT4G27160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR