F12903

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12903

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12903

Determination of introduced cDNA(s)

  • RAFL09-70-H13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-70-H13 - Resource: pda06713

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-70-H13 - full reading 
    ATAGTAAACT CAAGTAATCA AGCAAGTAAA CGAAACATAA AAATAAAAGT 
    AGTGCAAGAA ACAGAGGAGT TAGATACCAA AAAGTGAGAG ATATCGAATG 
    GCGGAGAAAG AAGAGAGTGT GAAGCTTCTA GGGTTTTGGG CAAGCCCTTT 
    TAGTCGTCGA GTCGAGATGG CTCTCAAACT CAAAGGCGTG CCATACGAAT 
    ACTTGGAAGA AGATTTGCCC AACAAGACCC CTTTGCTTCT GGAGCTAAAC 
    CCGCTTCACA AGAAAGTTCC GGTTCTTGTC CACAATGACA AAATATTACT 
    CGAGTCACAT CTGATTCTCG AATACATCGA TCAGACGTGG AAGAACAGTC 
    CAATTCTTCC TCAAGATCCT TACGAGAAGG CCATGGCTCG ATTTTGGGCC 
    AAGTTCATCG ATGACCAGAT CCTAACACTA GGGTTTAGGT CCCTTGTAAA 
    AGCAGAGAAA GGAAGAGAGG TTGCTATTGA AGAGACTCGG GAACTGCTTA 
    TGTTTCTTGA GAAAGAAGTC ACTGGAAAAG ATTTCTTCGG TGGCAAGACA 
    ATCGGATTCT TGGACATGAT CGCAGGAAGT ATGATCCCAT TTTGTCTAGC 
    TAGACTTTGG AAAGGTATTG GAATTGATAT GATTCCAGAG GAGAAGTTTC 
    CGGAATTAAA TAGATGGATC AAGAATTTGG AAGAAGTTGA GGCAGTGAGG 
    GGATGTATTC CTCCAAGAGA GAAACAAATT GAGCGCATGA CCAAAATTGC 
    AGAGACAATT AAGTCTGCCT AAATTAAAGA TACTTCTTGC CTACGAAAAT 
    ATTTGATTTA TATGCTTGCA TCGTTTTTTA TTTATATTTT TATTTTTTAA 
    AGTTTTTCGA AAAATAGAAT GACCTAATAT TTAAGTAAAA AGATCAAAAA 
    CCTATTTGAA AGTTACAGCA ATCAAATAAC GTGGTGTGTC TGGAGATTGT 
    AAAAGCCAAG ACTAGAAGGA AATAAGAATA AAATAAC

    Gene models with high sequence identity

    1. AT2G29490.1 [+] show detail - glutathione S-transferase TAU 1
      E-value: 0; Score: 99.80

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Thioredoxin fold 6.3e-20
    Gene3D Glutathione S-transferase, C-terminal-like 4.7e-39
    HMMPfam Glutathione S-transferase, N-terminal 5.3e-12
    HMMPfam Glutathione S-transferase, C-terminal 1.8e-05
    ProfileScan Glutathione S-transferase, N-terminal 23.273
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 18.669
    superfamily Glutathione S-transferase, C-terminal-like 5.5e-36
    superfamily Thioredoxin-like fold 3.5e-24
    HMMPanther GLUTATHIONE S-TRANSFERASE 3.8e-105
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 3.8e-105

    See the detailed result >

    AT2G29490.1

    Model type
    Protein coding
    Short Description
    glutathione S-transferase TAU 1
    Curator Summary
    Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).
    Computational Description
    glutathione S-transferase TAU 1 (GSTU1); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase tau 2 (TAIR:AT2G29480.1); Has 9031 Blast hits to 9013 proteins in 1259 species: Archae - 0; Bacteria - 4823; Metazoa - 1003; Fungi - 192; Plants - 2095; Viruses - 0; Other Eukaryotes - 918 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR