F12909

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12909

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12909

Determination of introduced cDNA(s)

  • RAFL06-86-A08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-86-A08 - Resource: pda03884

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-86-A08 - full reading 
    AGAAGAAATC TTTCAGATTT GCGCATATCG ACAATTTTCC GAGCGGCCAG 
    TTTACGTATT TTGTTTGTAG TTAACGTGTT TCAAGGACTT TGACAATGGC 
    TGAGGAAGCG CATAAGGTAA CATTGAATGT CTATGATTTA AGCCAAGGCT 
    TGGCACGCCA GCTCTCACAA TCACTCCTGG GAAAGGTTAT TGAAGGTGTA 
    TGGCATACAG GAATAGTTGT CTATGGGAAT GAGTACTTTT TTGGAGGAGG 
    GATACAACAT TTACCAGTTG GAAGAACTCC ATATGGAACA CCAATTCGAA 
    CGATAGAGTT GGGTCTATCA CATGTGCCTA AAGATGTATT CGAGATGTAC 
    TTGGAAGAAA TCAGTCCTCG TTACACTGCT GAATCCTACA ATTTACTTAC 
    TCACAACTGC AACAACTTCA GCAACGAGGT CGCTCAGTTT TTGGTGGGTA 
    AAGGGATTCC TGACTACATT CTCCAGCTTC CTAATGATGT TCTAAACAGT 
    CCCATGGGTG GTCTTATAAT GCCTATGTTG CAAGGCCTCG AAACAACTCT 
    AAAGGCTGGT GCTGTTCCTC AAGTTCCACA GTTTAGGCCA CAGCCACAAC 
    CTTTTGGAGC TTTTAGTAAA GATGATGGCC CACAAATTGT GATAGCTCCT 
    AAGCTCGAGG CAGCAGAAAC CTCAACTGCA ACTGAGAAAG TGCCACCTGT 
    TATTCAACCA TCAGCTAGTA AAGAGAAGGT CAAGGACGAC CCGTTGGGTG 
    ATGCTAGGGC CAAGATTCAG GAAGAGATTA CAAGCGAATT TGCAGCTCTA 
    ATGGCACAAG GCACATTACG AGCAAGTGAA GCAGCTGCTA TGGCGACAAA 
    AAGAGTCATG CAAAAGTACG GACATCTCAA TGTAAACGCT TAGTGCAATA 
    ACAGAGAGAT GAAACATTTT ATTAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT3G07090.1 [+] show detail - PPPDE putative thiol peptidase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UNCHARACTERIZED 2e-53
    HMMPfam Protein of unknown function DUF862, eukaryotic 3.1e-42

    See the detailed result >

    AT3G07090.1

    Model type
    Protein coding
    Short Description
    PPPDE putative thiol peptidase family protein
    Computational Description
    PPPDE putative thiol peptidase family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT5G25170.1); Has 872 Blast hits to 872 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 235; Fungi - 119; Plants - 332; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR