F12927

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12927

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F12927

Determination of introduced cDNA(s)

  • RAFL05-14-F03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-14-F03 - Resource: pda01271

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-14-F03 - full reading
    TTACAGTGAT TCAAGAGGCC TTCCAGGAGT TAGGAAAGAG GTTGCTGAGT 
    TCATTCAACG GCGTGATGGG TATCCAAGTG ACCCAGAACT CATCTTTCTC
    ACTGATGGAG CTAGCAAAGG TGTGATGCAA ATCTTGAATT GTGTTATACG
    CGGTAATGGA GATGGGATTC TAGTTCCGGT TCCACAGTAT CCACTTTACT
    CAGCTACCAT ATCACTGTTA GGTGGTACTC TTGTTCCTTA CTATCTTGAT
    GAGTCTGAAA ACTGGGGACT TGATGTTGCT AACCTTCGAC AATCCGTTGC
    TCAGGCTCGT TCTCAAGGGA TAACAGTAAG GGCAATGGTG ATCATTAACC
    CTGGGAACCC AACTGGCCAG TGTCTAAGCG AAGCTAACAT AAGAGAGATA
    TTGAAGTTCT GTTATAACGA GAAACTGGTT CTTCTGGGAG ACGAGGTTTA
    TCAGCAGAAC ATATACCAGG ATGAGCGTCC CTTTATCAGC TCCAAGAAGG
    TTTTGATGGA AATGGGTTCG CCGTTCAGCA AGGAAGTTCA GCTTGTATCT
    TTTCACACAG TCTCTAAAGG ATATTGGGGT GAATGTGGAC AGCGAGGTGG
    ATACTTTGAG ATGACCAACC TCCCTCCAAG GGTTGTTGAG GAGATATACA
    AGGTTGCATC AATTGCCCTC AGCCCTAATG TCTCTGCGCA AATCTTTATG
    GGTTTGATGG TTAATCCTCC AAAGCCTGGA GACATTTCAT ATGACCAGTT
    CGCCCGTGAA AGCAAGGGGA TTCTTGAATC TTTGAGAAGA AGAGCAAGGC
    TCATGACAGA TGGATTCAAC AGCTGCAAAA ACGTCGTGTG CAATTTCACA
    GAAGGTGCAA TGTATTCGTT TCCTCAAATA CGGTTACCAA CGGGAGCTCT
    CCAAGCTGCA AAACAAGCTG GAAAAGTGCC AGACGTTTTC TACTGTCTCA
    AGCTCTTAGA AGCCACAGGA ATCTCCACAG TACCTGGCTC TGGATTTGGA
    CAGAAAGAAG GTGTGTTCCA TCTGAGGACA ACAATCCTGC CAGCAGAAGA
    TGAGATGCCG GAGATCATGG ATAGCTTCAA GAAGTTCAAC GACGAGTTCA
    TGACTCAGTA TGATAATAAC TTTGGTTATT CGAAAATGTG ATTACTTCTT
    CTTCGAACGA CTATTGTGTT CTGCTACACT CTTTAAAGCT AAATCTCTGT
    AGTACACTCT TTCTCTTTGC CCTATTCTAT AAACCATATC TCTCTCTTTG
    TGTCTCTTTT TTTTGGGTGT AAACTCTCTC TTGTGTCTCT ATTTCTATTT
    TCAATTGGAA ACTGATTAAG ATCTTTTC

    Gene models with high sequence identity

    1. AT1G23310.1 [+] show detail - glutamate:glyoxylate aminotransferase
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Pyridoxal phosphate-dependent transferase, major domain 4.5e-64
    HMMPfam Aminotransferase, class I/II 2.1e-32
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 2 3.59999643436007e-16
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 0.00000036000003870074
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 0.00000036000003870074
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 0.00000036000003870074
    HMMPanther PTHR11751 0
    HMMPanther PTHR11751:SF29 0
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 8.30001403791594e-45

    See the detailed result >

    AT1G23310.1

    Model type
    Protein coding
    Short Description
    glutamate:glyoxylate aminotransferase
    Curator Summary
    Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway.
    Computational Description
    glutamate:glyoxylate aminotransferase (GGT1); FUNCTIONS IN: glycine:2-oxoglutarate aminotransferase activity, L-alanine:2-oxoglutarate aminotransferase activity, alanine-glyoxylate transaminase activity; INVOLVED IN: photorespiration; LOCATED IN: apoplast, peroxisome, chloroplast, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: alanine-2-oxoglutarate aminotransferase 2 (TAIR:AT1G70580.4); Has 27976 Blast hits to 27968 proteins in 2949 species: Archae - 777; Bacteria - 19095; Metazoa - 617; Fungi - 736; Plants - 1276; Viruses - 0; Other Eukaryotes - 5475 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR