F12933

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12933

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12933

Determination of introduced cDNA(s)

  • RAFL05-12-D03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-12-D03 - Resource: pdz87468

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-12-D03 - 5 prime EST 
    AAAAAAGTTG GACATCCTTG CTTTTGGTCT AACTTTCTCT CTCTTGCTTC 
    TACGCTTCTT CTTGTGGCGT AGATTGTTAT AGAGAGGGAA ACCAAAAAAG 
    GGAATCTCAA AAGCTCGAGT TCACAGATTT GACCCGAGTC TTTAATCCAA 
    TCTGCTGGTT CGTTTTCCAC ATTCAAACTC GACTCTTGAA TATCAAATCA 
    GAAGTCTTTG CTATGGCTGC TACCGCTGCT GCTTCTGTTG TCCGTTACGC 
    ACCTGAGGAT CATACTCTTC CCAAGCCCTG GAAAGGCCTT ATCGATGATA 
    GAACTGGTTA CTTGTACTTT TGGAATCCTG AGACCAATGT TACTCAGTAC 
    GAGAAACCAA CCCCCTCTCT ACCTCCTAAG TTTTCTCCCG CCGTTTCTGT 
    TAGCTCTTCC GTTCAGGTTC AACAAACTGA TGCCTATGCT CCTCCCAAGG 
    ATGACGATAA GTACTCCAGA GGCTCTGAAC GNGTGTNCAG GTTTTCTGAG 
    GGTGGCAGGA GTGGACCGCC TTATTCNAAC GGTGCTGCTA ATGGAGTTGG 
    GGATTCTGCT TATGG

    Gene models with high sequence identity

    1. AT3G01540.4 [+] show detail - DEAD box RNA helicase 1
      E-value: 0; Score: 99.47

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-12-D03 - 3 prime EST 
    ACCAATCTCT GAGCTGCAAT AATAAATAAG ATGAAATACA AACTGTAAGA 
    TATCAATTGT AGTTTTGAGC GTAAATTTCC AATGGGAGGG AACAGTCTTC 
    TTGGTCTTGT TTTTTTTTCT TTTGTTTCTT CATCGGCCAA AAAATATATA 
    ATGTCACAAT GATAAGGGAA ATCCCCCACA ACACAATCTT CTGTCACTTG 
    GCTTTATCAG AGCTTTGTAT CTCTCTTTTC ATCTGTGTTT CATCATCATC 
    G

    Gene models with high sequence identity

    1. AT3G01540.3 [+] show detail - DEAD box RNA helicase 1
      E-value: 2e-140; Score: 100.00

    AT3G01540.3

    Model type
    Protein coding
    Short Description
    DEAD box RNA helicase 1
    Curator Summary
    RNA HELICASE DRH1
    Computational Description
    DEAD box RNA helicase 1 (DRH1); FUNCTIONS IN: ATPase activity, ATP-dependent RNA helicase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase family protein (TAIR:AT5G14610.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

    AT3G01540.4

    Model type
    Protein coding
    Short Description
    DEAD box RNA helicase 1
    Curator Summary
    RNA HELICASE DRH1
    Computational Description
    DEAD box RNA helicase 1 (DRH1); FUNCTIONS IN: ATPase activity, ATP-dependent RNA helicase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase family protein (TAIR:AT5G14610.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR