F12950

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12950

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12950

Determination of introduced cDNA(s)

  • RAFL09-95-K07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-95-K07 - Resource: pda12386

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-95-K07 - full reading 
    AAGAACCAAT CCCAAAGCTC ATTTATTCTT TCCTTTTCAA TTATTCTTTC 
    AATTTTTCCG ATCGACGGAG GTTGATCGGC GACGGCGTAA TGGCCGGAGG 
    AATCGTCTCA CCGGCCTCTC TACTCGACCT AATCGCTGAT ATCGTCGAGA 
    TTCCACTCAA CACCGGAATG TTCAAGAAGG ATTGCGCAGA TCTCACTCGA 
    CGAGTTTGTC TCTTAACGCA TTTGTTAGAG GAGATTAGAG ACTCAACTCC 
    TATCGATTCC GCCGCTTCGT CGTCGTCGGA GAATGATTGT TGGTCTGATC 
    TCGTGGTCGG ACTTCAAGCC GCGAAGCGTC TTCTCTCCAC AGCTCGATTC 
    CAAGCTCGCG ATTCCTCTGA TGGTGCTGCG AAGAGAATCT CATTTCAGTT 
    CCAATGTGTT ACATGGAAGC TTGAGAAAGC ATTGAGCAAT CTTCCATATG 
    ATCTTTATGA TATCTCTGAC GAAGTTGGAG AACAAGTGGA GCTAGCGAGA 
    TCACAGTTGC GAAGAGCAAT GCAGAGATAT GGATCGTTGA ATTCGAACAA 
    GTTCTCGAGT GCTTTATCTG AGCCAATGGA GAGAGATGGT TTTAGTAATG 
    TTATAAAGAT CAAAGCTGAG GAAAAGCTTG AGAGTGTTTC AGAAACACTT 
    CATTTTGGTG AGGAGGAGGA GAAACAAAGT TCGCCGCCTC TAAGGAGAAG 
    CTCTTCCATT TCTTTGGCTT ATTATTTGTC CAAAGATGCT GATACTGATA 
    GATTAGACAA AATGGTTAAC AAGAACACTG ATGAATCGAA GAAATCTGAT 
    AAACTCACGA TTCCGGTTGA TTTTCTTTGT CCGGTGTCGC TTGAACTGAT 
    GAAGGATCCT GTCATTGTTG CCACAGGACA GACTTACGAG AGGGCATACA 
    TACAGAGATG GATCGACTGT GGGAATCTAA CATGTCCTAA GACTCAGCAG 
    AAACTCGAAA ACTTTACGCT TACACCAAAC TATGTTCTCA GAAGTCTCAT 
    CTCTCGGTGG TGCGCTGAAC ACAACATTGA GCAACCTGCA GGTTACATTA 
    ACGGCAGGAC AAAAAACAGT GGAGATATGT CGGTGATCCG GGCCTTGGTT 
    CAGAGACTCT CAAGCCGGTC AACAGAGGAT CGAAGGAATG CGGTTTCTGA 
    AATCCGCTCT CTGTCAAAGA GAAGTACGGA TAATCGCATT CTGATTGCAG 
    AAGCAGGAGC AATCCCTGTT TTGGTGAATC TTTTAACCTC AGAGGATGTT 
    GCAACGCAGG AAAACGCAAT CACATGTGTT CTCAACCTCT CTATATATGA 
    AAACAACAAA GAGCTGATAA TGTTTGCTGG TGCAGTCACC TCAATTGTTC 
    AAGTCCTTAG AGCCGGAACC ATGGAAGCAA GAGAAAACGC AGCAGCGACA 
    CTTTTTAGCC TGTCGTTAGC CGATGAGAAC AAGATCATAA TAGGCGGGTC 
    AGGTGCGATA CCTGCCTTAG TTGATCTGCT CGAGAACGGG ACCCCGAGAG 
    GGAAGAAAGA TGCAGCAACG GCATTGTTCA ATCTCTGCAT TTATCATGGA 
    AACAAAGGTA GAGCAGTCAG AGCCGGTATA GTAACTGCAT TGGTTAAGAT 
    GCTCAGTGAT TCCACCCGCC ACCGGATGGT TGATGAAGCT TTGACAATTC 
    TCTCAGTTCT TGCAAATAAT CAAGACGCGA AATCCGCGAT AGTAAAAGCG 
    AATACTCTAC CCGCGTTGAT AGGTATTCTC CAAACGGATC AAACTAGAAA 
    CCGAGAGAAC GCAGCAGCGA TATTGCTTTC GCTGTGTAAA AGAGACACTG 
    AGAAACTGAT CACTATCGGT AGACTCGGTG CGGTTGTCCC GTTAATGGAT 
    TTATCGAAGA ATGGAACAGA GAGAGGCAAA AGGAAAGCCA TATCTTTGTT 
    AGAGCTTCTT CGTAAAGCAT GCCAATAATA ACTAGTCTTC TGACAAAAAA 
    GGTTCATCAA GCTCTCATTT TTATTGAGTT TATTAAATTA TGTTAATATT 
    CTTGTTTAAT TGATTTGATT TTTTTTGGAA TTCCATTTGT GGAATCGAAA 
    TTGAAGATGG TGAGCGAAAA TGGTGTTCGA AAATCGAACT CTGTTTTGCT 
    CGCTGTGTAT TTATTTGTTA CATTTGTAAT AATATTGGAG ATGAAT

    Gene models with high sequence identity

    1. AT1G23030.1 [+] show detail - ARM repeat superfamily protein
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Armadillo 11.882
    ProfileScan Armadillo 8.662
    ProfileScan Armadillo 9.537
    superfamily Armadillo-type fold 9.5e-68
    superfamily RING/U-box 2.7e-10
    Gene3D no description 1.2e-27
    Gene3D Armadillo-like helical 3.1e-55
    HMMPfam Armadillo 1.2e-09
    HMMPfam Armadillo 6e-08
    HMMPfam U box domain 2.4e-18
    HMMSmart U box domain 2.2e-30
    HMMSmart Armadillo 4.9e-05
    HMMSmart Armadillo 110
    HMMSmart Armadillo 0.00014
    HMMSmart Armadillo 12
    HMMSmart Armadillo 23
    HMMPanther VACUOLAR PROTEIN 8-RELATED 2.1e-15
    HMMPanther BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAIN 2.1e-15

    See the detailed result >

    AT1G23030.1

    Model type
    Protein coding
    Short Description
    ARM repeat superfamily protein
    Computational Description
    ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G71020.1); Has 7493 Blast hits to 5002 proteins in 288 species: Archae - 0; Bacteria - 26; Metazoa - 2087; Fungi - 726; Plants - 3867; Viruses - 3; Other Eukaryotes - 784 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR