F13014

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13014

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13014

Determination of introduced cDNA(s)

  • RAFL05-03-A05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-03-A05 - Resource: pda00849

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-03-A05 - full reading 
    ATCTCACTTT GTTCATCTAA AAACTCCTCC TTTCATTTCC AAACAAAAAC 
    TTCTTTTTAT TCTCACATCT TAAAGATCTC TCTCATGGCG ATGTCTTTCT 
    CAGGAGCTGT TCTCACTGGT ATGGCTTCTT CTTTCCACAG CGGAGCCAAG 
    CAGAGCAGCT TCGGCGCTGT CAGAGTCGGC CAGAAAACTC AGTTCGTCGT 
    CGTTTCTCAA CGCAAGAAGT CGTTGATCTA CGCCGCTAAA GGTGACGGCA 
    ACATCCTCGA TGACCTCAAT GAGGCCACAA AGAAAGCTTC AGATTTCGTG 
    ACGGATAAAA CAAAAGAGGC ATTAGCAGAT GGTGAGAAAG CGAAAGACTA 
    CGTTGTTGAA AAAAACAGTG AAACCGCAGA TACATTGGGT AAAGAAGCTG 
    AGAAAGCTGC GGCGTATGTG GAGGAGAAAG GAAAAGAAGC CGCAAACAAG 
    GCGGCAGAGT TCGCGGAGGG TAAAGCAGGA GAGGCTAAGG ATGCCACAAA 
    GTAGGGTCTT ACCTAATCAG TTAATTTCAA GCACTTAAAC TCGTAGATAT 
    ATTGATCCAT ATCCTCTCTC TTCATGTTTA ATAGTACTTA CAATAAGATG 
    AGTCTGTTGT AATTTCTATT AATTTCACAT CACAACTGAA ATAAGATATG 
    GTATCCACAG TCACCGTCAA AAACT

    Gene models with high sequence identity

    1. AT2G42540.2 [+] show detail - cold-regulated 15a
      E-value: 0; Score: 99.85

     

    InterPro Scan Digest

    See the detailed result >

    AT2G42540.2

    Model type
    Protein coding
    Short Description
    cold-regulated 15a
    Curator Summary
    A cold-regulated gene whose product is targeted to the chloroplast. Cor15am protects stromal proteins from aggregation under various stress conditions. Constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope. Late Embryogenesis abundant protein (LEA).
    Computational Description
    cold-regulated 15a (COR15A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cold regulated 15b (TAIR:AT2G42530.1); Has 189 Blast hits to 136 proteins in 40 species: Archae - 0; Bacteria - 9; Metazoa - 3; Fungi - 13; Plants - 155; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR