F13021

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13021

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F13021

Determination of introduced cDNA(s)

  • RAFL09-60-N17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-60-N17 - Resource: pda17785

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-60-N17 - full reading 
    GAAGACTAGA CTTTAGCTTA TCGTTCTAGA GAGAGGAAGA AGATGAGGGA 
    GAATTGGGCG GTGGTGGCTC TGTTTACACT ATGCATTGTA GGGTTTGAGC 
    TTAGATTCAT CCATGGAGCT ACTGATGCAT CAGACACTTC AGCATTGAAC 
    ACATTGTTCA GTGGTATGCA TTCTCCAGCT CAGCTAACAC AATGGACTGC 
    AGCAGCTGGT GATCCTTGTG GCCAGAATTG GAGAGGCGTC ACTTGTTCCG 
    GCTCACGAGT TACTCAAATA AAGTTGTCAG GTCTTGAGCT CTCTGGAACT 
    CTTGGAGGAT ACATGCTTGA TAAATTGACT TCTCTTACCG AGCTTGATCT 
    AAGCAGCAAT AATCTTGGAG GTGATTTACC ATATCAGTTT CCTCCAAATC 
    TGCAACGATT GAACCTTGCG AATAATCAAT TCACTGGAGC TGCTTCGTAC 
    TCACTTTCTC AGATTACACC ACTTAAGTAT CTCAATCTTG GTCACAATCA 
    GTTTAAGGGG CAGATAGCTA TCGACTTCTC CAAGCTCGAC TCTCTCACAA 
    CCTTGGACTT CTCTTTCAAT TCTTTCACGA ACTCTTTACC GGCAACGTTT 
    TCCTCTCTAA CAAGTTTAAA ATCACTATAC CTTCAGAACA ATCAGTTCTC 
    AGGCACAGTC GATGTCTTAG CCGGTCTTCC TCTTGAGACT CTGAACATTG 
    CGAACAATGA CTTCACGGGG TGGATCCCCA GTTCTTTAAA GGGCATCACA 
    TTAATAAAAG ATGGCAACTC ATTCAATACT GGACCTGCAC CTCCACCACC 
    ACCTGGTACA CCTCCTATCC GTGGCTCCCC GAGCCGTAAA TCTGGAGGAC 
    GTGAAAGCCG GTCTAGTGAT GAGTCCACCA GAAATGGAGA TTCCAAGAAA 
    TCAGGAATCG GAGCGGGGGC AATTGCGGGC ATAATCATTT CATTGTTAGT 
    AGTTACAGCT CTTCTTGTTG CTTTCTTCTT GTTCAGAAGA AAAAAATCAA 
    AGAGGTCATC ACCCATGGAC ATTGAGAAAA CCGATAACCA GCCTTTCACT 
    CTTGCTTCAA ACGACTTTCA CGAAAACAAT TCCATTCAGA GTTCTTCATC 
    AGTTGAGACA AAGAAACTGG ACACTTCATT GTCTATTAAT CTTCGACCTC 
    CACCAATTGA TAGAAACAAA TCATTTGATG ATGAAGATTC GACAAGAAAG 
    CCTATTGCTG TCAAGAAATC CACAGTGGTG GTTCCTTCAA ATGTGAGACT 
    CTATTCAGTT GCAGATCTCC AAATTGCTAC TGGCAGTTTC AGCGTAGATA 
    ATCTTCTTGG AGAAGGGACT TTTGGACGAG TATACAGAGC TGAGTTTGAT 
    GATGGAAAGG TTCTTGCTGT GAAGAAAATT GATTCGTCTG CTCTCCCACA 
    TGGCATGACC GATGATTTCA TTGAAATGGT ATCGAAAATA GCCAATTTGG 
    ATCATCCAAA TGTGACCAAG CTTGTTGGTT ACTGTGCTGA GCACGGACAA 
    CATCTCGTGG TCTATGAATT CCACAAAAAT GGATCATTAC ATGACTTCTT 
    ACACTTATCA GAAGAGGAAA GTAAAGCATT GGTGTGGAAT TCACGAGTCA 
    AGATCGCTCT TGGGACTGCA CGCGCATTGG AGTATCTGCA TGAAGTTTGC 
    TCACCGTCTA TAGTGGACAA GAATATCAAA TCAGCTAATA TTTTACTCGA 
    TTCAGAGCTG AATCCTCACT TATCAGATTC TGGTCTCGCA AGCTTCCTTC 
    CCACAGCTAA TGAGTTATTA AACCAAACCG ATGAAGGGTA TAGCGCACCT 
    GAAGTATCAA TGTCAGGCCA ATATTCTTTG AAGAGTGACA TTTACAGTTT 
    TGGAGTAGTG ATGCTTGAAC TTTTAACTGG GAGAAAACCA TTTGACAGCA 
    CAAGGTCAAG ATCTGAGCAG TCACTGGTTC GATGGGCGAC ACCACAACTT 
    CACGACATTG ATGCTTTAGC CAAAATGGTT GATCCAGCTC TTAAAGGGCT 
    TTATCCTGTC AAATCCCTTT CTCGATTTGC AGATGTTATC GCTCTCTGTG 
    TCCAGCCGGA GCCGGAGTTT AGACCACCAA TGTCTGAAGT TGTGCAGGCT 
    CTAGTTGTGT TAGTGCAGAG AGCTAACATG AGCAAGAGAA CTGTCGGAGT 
    TGATCCATCG CAACGTGCTG GTAGTGCCGA CACGACCAGT GATTACATGT 
    AAATGCCTCT ACCAAGAGAA AAGACAAACA CTTTGCTCCG TCGGATGTTA 
    ATCATAGACA ATTGGAAGAT AGAAAAAAGC AACCTCATAC ATTGTATAAT 
    CCCATTGTTT TATTGTAATT GTATGTTCCA AAGGTGTAGC TTCTAGATCC 
    TTTACATGAA CAAAATTCTT TCTTGTAATC TTCTACATTG GTTCTATTTG 
    GGCTTGGTTC AATTCTTGAT CACCAAAA

    Gene models with high sequence identity

    1. AT1G53730.1 [+] show detail - STRUBBELIG-receptor family 6
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 5.8e-69
    superfamily L domain-like 7.9e-44
    HMMPanther STRUBBELIG RECEPTOR 7.8e-230
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 7.8e-230
    HMMPfam Serine/threonine-protein kinase-like domain 6.2e-40
    HMMPfam Leucine-rich repeat 0.12
    HMMPfam Leucine-rich repeat 0.15
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 1.4e-07
    ProfileScan Protein kinase, catalytic domain 35.114
    Gene3D no description 6.8e-40
    Gene3D no description 5.7e-19
    Gene3D no description 1.5e-40
    PatternScan Protein kinase, ATP binding site 0
    HMMSmart Leucine-rich repeat, typical subtype 34
    HMMSmart Leucine-rich repeat, typical subtype 310
    HMMSmart Leucine-rich repeat, typical subtype 15
    HMMSmart Leucine-rich repeat, typical subtype 52
    HMMSmart Serine/threonine-protein kinase domain 1.3e-19
    HMMSmart Tyrosine-protein kinase, catalytic domain 3e-15

    See the detailed result >

    AT1G53730.1

    Model type
    Protein coding
    Short Description
    STRUBBELIG-receptor family 6
    Computational Description
    STRUBBELIG-receptor family 6 (SRF6); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 7 (TAIR:AT3G14350.1); Has 158312 Blast hits to 119064 proteins in 3476 species: Archae - 117; Bacteria - 16807; Metazoa - 46536; Fungi - 8480; Plants - 68549; Viruses - 305; Other Eukaryotes - 17518 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR