F13021

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13021

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F13021

Determination of introduced cDNA(s)

  • RAFL09-60-N17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-60-N17 - Resource: pda17785

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-60-N17 - full reading
    GAAGACTAGA CTTTAGCTTA TCGTTCTAGA GAGAGGAAGA AGATGAGGGA 
    GAATTGGGCG GTGGTGGCTC TGTTTACACT ATGCATTGTA GGGTTTGAGC
    TTAGATTCAT CCATGGAGCT ACTGATGCAT CAGACACTTC AGCATTGAAC
    ACATTGTTCA GTGGTATGCA TTCTCCAGCT CAGCTAACAC AATGGACTGC
    AGCAGCTGGT GATCCTTGTG GCCAGAATTG GAGAGGCGTC ACTTGTTCCG
    GCTCACGAGT TACTCAAATA AAGTTGTCAG GTCTTGAGCT CTCTGGAACT
    CTTGGAGGAT ACATGCTTGA TAAATTGACT TCTCTTACCG AGCTTGATCT
    AAGCAGCAAT AATCTTGGAG GTGATTTACC ATATCAGTTT CCTCCAAATC
    TGCAACGATT GAACCTTGCG AATAATCAAT TCACTGGAGC TGCTTCGTAC
    TCACTTTCTC AGATTACACC ACTTAAGTAT CTCAATCTTG GTCACAATCA
    GTTTAAGGGG CAGATAGCTA TCGACTTCTC CAAGCTCGAC TCTCTCACAA
    CCTTGGACTT CTCTTTCAAT TCTTTCACGA ACTCTTTACC GGCAACGTTT
    TCCTCTCTAA CAAGTTTAAA ATCACTATAC CTTCAGAACA ATCAGTTCTC
    AGGCACAGTC GATGTCTTAG CCGGTCTTCC TCTTGAGACT CTGAACATTG
    CGAACAATGA CTTCACGGGG TGGATCCCCA GTTCTTTAAA GGGCATCACA
    TTAATAAAAG ATGGCAACTC ATTCAATACT GGACCTGCAC CTCCACCACC
    ACCTGGTACA CCTCCTATCC GTGGCTCCCC GAGCCGTAAA TCTGGAGGAC
    GTGAAAGCCG GTCTAGTGAT GAGTCCACCA GAAATGGAGA TTCCAAGAAA
    TCAGGAATCG GAGCGGGGGC AATTGCGGGC ATAATCATTT CATTGTTAGT
    AGTTACAGCT CTTCTTGTTG CTTTCTTCTT GTTCAGAAGA AAAAAATCAA
    AGAGGTCATC ACCCATGGAC ATTGAGAAAA CCGATAACCA GCCTTTCACT
    CTTGCTTCAA ACGACTTTCA CGAAAACAAT TCCATTCAGA GTTCTTCATC
    AGTTGAGACA AAGAAACTGG ACACTTCATT GTCTATTAAT CTTCGACCTC
    CACCAATTGA TAGAAACAAA TCATTTGATG ATGAAGATTC GACAAGAAAG
    CCTATTGCTG TCAAGAAATC CACAGTGGTG GTTCCTTCAA ATGTGAGACT
    CTATTCAGTT GCAGATCTCC AAATTGCTAC TGGCAGTTTC AGCGTAGATA
    ATCTTCTTGG AGAAGGGACT TTTGGACGAG TATACAGAGC TGAGTTTGAT
    GATGGAAAGG TTCTTGCTGT GAAGAAAATT GATTCGTCTG CTCTCCCACA
    TGGCATGACC GATGATTTCA TTGAAATGGT ATCGAAAATA GCCAATTTGG
    ATCATCCAAA TGTGACCAAG CTTGTTGGTT ACTGTGCTGA GCACGGACAA
    CATCTCGTGG TCTATGAATT CCACAAAAAT GGATCATTAC ATGACTTCTT
    ACACTTATCA GAAGAGGAAA GTAAAGCATT GGTGTGGAAT TCACGAGTCA
    AGATCGCTCT TGGGACTGCA CGCGCATTGG AGTATCTGCA TGAAGTTTGC
    TCACCGTCTA TAGTGGACAA GAATATCAAA TCAGCTAATA TTTTACTCGA
    TTCAGAGCTG AATCCTCACT TATCAGATTC TGGTCTCGCA AGCTTCCTTC
    CCACAGCTAA TGAGTTATTA AACCAAACCG ATGAAGGGTA TAGCGCACCT
    GAAGTATCAA TGTCAGGCCA ATATTCTTTG AAGAGTGACA TTTACAGTTT
    TGGAGTAGTG ATGCTTGAAC TTTTAACTGG GAGAAAACCA TTTGACAGCA
    CAAGGTCAAG ATCTGAGCAG TCACTGGTTC GATGGGCGAC ACCACAACTT
    CACGACATTG ATGCTTTAGC CAAAATGGTT GATCCAGCTC TTAAAGGGCT
    TTATCCTGTC AAATCCCTTT CTCGATTTGC AGATGTTATC GCTCTCTGTG
    TCCAGCCGGA GCCGGAGTTT AGACCACCAA TGTCTGAAGT TGTGCAGGCT
    CTAGTTGTGT TAGTGCAGAG AGCTAACATG AGCAAGAGAA CTGTCGGAGT
    TGATCCATCG CAACGTGCTG GTAGTGCCGA CACGACCAGT GATTACATGT
    AAATGCCTCT ACCAAGAGAA AAGACAAACA CTTTGCTCCG TCGGATGTTA
    ATCATAGACA ATTGGAAGAT AGAAAAAAGC AACCTCATAC ATTGTATAAT
    CCCATTGTTT TATTGTAATT GTATGTTCCA AAGGTGTAGC TTCTAGATCC
    TTTACATGAA CAAAATTCTT TCTTGTAATC TTCTACATTG GTTCTATTTG
    GGCTTGGTTC AATTCTTGAT CACCAAAA

    Gene models with high sequence identity

    1. AT1G53730.1 [+] show detail - STRUBBELIG-receptor family 6
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 5.8e-69
    superfamily L domain-like 7.9e-44
    HMMPanther STRUBBELIG RECEPTOR 7.8e-230
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 7.8e-230
    HMMPfam Serine/threonine-protein kinase-like domain 6.2e-40
    HMMPfam Leucine-rich repeat 0.12
    HMMPfam Leucine-rich repeat 0.15
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 1.4e-07
    ProfileScan Protein kinase, catalytic domain 35.114
    Gene3D no description 6.8e-40
    Gene3D no description 5.7e-19
    Gene3D no description 1.5e-40
    PatternScan Protein kinase, ATP binding site 0
    HMMSmart Leucine-rich repeat, typical subtype 34
    HMMSmart Leucine-rich repeat, typical subtype 310
    HMMSmart Leucine-rich repeat, typical subtype 15
    HMMSmart Leucine-rich repeat, typical subtype 52
    HMMSmart Serine/threonine-protein kinase domain 1.3e-19
    HMMSmart Tyrosine-protein kinase, catalytic domain 3e-15

    See the detailed result >

    AT1G53730.1

    Model type
    Protein coding
    Short Description
    STRUBBELIG-receptor family 6
    Computational Description
    STRUBBELIG-receptor family 6 (SRF6); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 7 (TAIR:AT3G14350.1); Has 158312 Blast hits to 119064 proteins in 3476 species: Archae - 117; Bacteria - 16807; Metazoa - 46536; Fungi - 8480; Plants - 68549; Viruses - 305; Other Eukaryotes - 17518 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR