F13027

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13027

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13027

Determination of introduced cDNA(s)

  • RAFL09-18-B09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-18-B09 - Resource: pda02024

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-18-B09 - full reading 
    GTCCTTGAAG CAGTCAAATT CTTCTCTGAA CTCCAAACAT CGCCATGTCC 
    GAGATTCTCT CTTCGTTGAG GTCACTAATG GCCTCTCACT CTCCTCCTCT 
    TGATGCTTTG GTTGTTCCTT CCGAAGACTA TCACCAGAGC GAGTATGTTT 
    CTGCACGAGA CAAACGCCGT GAGTTCGTGT CTGGATTCAG TGGAAGTGCA 
    GGTTTGGCAC TTATCACGAA GAAGGAAGCA AGACTTTGGA CAGATGGTCG 
    ATACTTCTTG CAAGCATTGC AACAGCTTAG CGATGAGTGG ACACTAATGC 
    GGATGGGAGA AGATCCTCTT GTTGAAGTTT GGATGTCTGA TAATCTACCT 
    GAAGAGGCAA ATATAGGTGT TGATTCATGG TGTGTCTCGG TAGACACTGC 
    GAATAGATGG GGGAAATCGT TTGCCAAGAA GAATCAGAAA CTAATCACCA 
    CAACTACTGA TCTTGTGGAT GAAGTTTGGA AGAGTCGTCC ACCTTCTGAG 
    ATGAGTCCGG TTGTTGTTCA TCCTTTGGAG TTTGCTGGCC GTTCTGTTTC 
    CCATAAATTC GAAGATTTGA GGGCAAAGCT TAAGCAAGAG GGTGCTCGTG 
    GTTTGGTCAT CGCTGCTCTT GATGAGGTTG CTTGGCTATA TAATATCCGT 
    GGAACTGATG TTGCTTATTG TCCCGTTGTT CATGCGTTTG CAATCCTTAC 
    CACCGACTCT GCGTTTCTCT ATGTTGACAA AAAGAAAGTG TCTGATGAGG 
    CAAACTCTTA TTTCAATGGG CTCGGTGTGG AAGTCCGGGA ATACACAGAT 
    GTGATCTCAG ATGTGGCCTT GCTTGCTTCG GATCGACTTA TTTCTTCATT 
    TGCCTCTAAA ACTGTCCAAC ATGAGGCTGC AAAGGATATG GAGATTGATT 
    CTGACCAGCC TGATCGGTTA TGGGTGGATC CTGCTTCGTG CTGCTATGCA 
    CTTTACTCCA AATTGGATGC TGAGAAGGTC CTTCTGCAAC CATCCCCTAT 
    ATCCCTCTCA AAAGCCTTGA AGAACCCGGT TGAGCTCGAA GGGATCAAGA 
    ATGCACATGT TCGTGATGGT GCTGCTGTTG TCCAGTACCT TGTTTGGCTC 
    GACAATCAGA TGCAGGAGCT CTATGGAGCA TCTGGATACT TCTTGGAAGC 
    AGAGGCAAGC AAAAAGAAAC CATCAGAAAC CTCTAAGCTT ACTGAAGTGA 
    CTGTGAGCGA TAAGCTGGAA AGTCGAGCTT CAAAAGAGCA TTTTAGAGGT 
    TTAAGCTTTC CTACTATATC ATCGGTTGGT TCAAACGCTG CTGTTATTCA 
    TTATTCACCA GAGCCAGAAG CTTGTGCCGA GATGGACCCC GACAAAATTT 
    ACTTATGTGA TTCAGGAGCA CAGTATCTCG ATGGAACAAC TGATATAACC 
    CGAACGGTTC ACTTTGGAAA ACCTTCAGCT CATGAAAAGG AATGCTATAC 
    TGCGGTCTTC AAGGGTCATG TTGCACTAGG AAATGCTCGG TTTCCAAAGG 
    GAACAAACGG CTATACACTT GATATTCTTG CTCGAGCTCC TTTGTGGAAG 
    TATGGGTTGG ATTATCGACA TGGTACTGGT CATGGAGTTG GTTCTTACCT 
    TTGTGTTCAT GAAGGACCTC ACCAAGTTAG TTTCAGACCG AGTGCCAGGA 
    ATGTACCTCT TCAAGCTACC ATGACTGTAA CAGATGAACC TGGTTACTAT 
    GAAGACGGGA ACTTTGGTAT TAGGTTGGAG AATGTTCTTG TTGTCAATGA 
    CGCTGAGACT GAATTCAATT TTGGCGACAA GGGCTACTTG CAATTCGAGC 
    ATATCACTTG GGCACCATAT CAAGTGAAAC TTATCGATCT AGACGAGTTG 
    ACACGGGAAG AGATTGACTG GTTAAACACA TATCATTCGA AGTGCAAAGA 
    CATCTTAGCC CCATTTATGA ACCAGACTGA AATGGAATGG CTCAAGAAAG 
    CTACCGAACC TGTAAGTGTA TCCGCTTGAT CCCCTCCCAG ATTTCTCTTA 
    AATAGATGTT TATCAATGGC TCCTTCACTT CTCTCACTAG TAAACCAAAA 
    ACATTCAAGT CATACACAGA TTATTTTCTT TAGTTTTGCA TTCAAAGTTC 
    ATGTTTCTGG ACCACATGTC TTTATTCATA GCAGATTCTC AGTTGTTGAA 
    CCAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT4G36760.1 [+] show detail - aminopeptidase P1
      E-value: 0; Score: 99.86

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Peptidase M24, structural domain 1.3e-48
    PatternScan Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site 0
    HMMPfam Peptidase M24, structural domain 2.9e-39
    HMMPfam Creatinase 1.4e-16
    HMMPanther XAA-PRO AMINOPEPTIDASE 1 2e-203
    HMMPanther Peptidase M24, structural domain 2e-203
    superfamily Peptidase M24, structural domain 3.1e-51

    See the detailed result >

    AT4G36760.1

    Model type
    Protein coding
    Short Description
    aminopeptidase P1
    Curator Summary
    Arabidopsis aminopeptidase P1
    Computational Description
    aminopeptidase P1 (APP1); FUNCTIONS IN: aminopeptidase activity, N-1-naphthylphthalamic acid binding; INVOLVED IN: auxin polar transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site (InterPro:IPR001131), Peptidase M24, structural domain (InterPro:IPR000994), Creatinase (InterPro:IPR000587); BEST Arabidopsis thaliana protein match is: Metallopeptidase M24 family protein (TAIR:AT3G05350.1); Has 10398 Blast hits to 10335 proteins in 2401 species: Archae - 277; Bacteria - 6310; Metazoa - 362; Fungi - 246; Plants - 146; Viruses - 0; Other Eukaryotes - 3057 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR