F13035

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13035

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
whole plant flowering stage (PO:0007016)
  • late (PATO:0000693)
    (Adult plant::Flowering::late)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13035

Determination of introduced cDNA(s)

  • RAFL09-87-D23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-87-D23 - Resource: pda09972

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-87-D23 - full reading 
    AATTAATGGA TCTAAATTTC TTTCACTTGT CCACTATCTC TCTACCAAAT 
    TTGTCATCTT CGTCCCCACT AATCACTCTC GCAAGTGAGA AAATAACAAA 
    GCTAGCTAGA AATGGAACAG TATGAGTTTC TTGAGCAAAT TGGAAAAGGA 
    TCTTTTGGGT CAGCTCTTTT AGTGAGACAT AAGCATGAGA AGAAAAAATA 
    TGTATTGAAA AAGATCCGTC TTGCCCGGCA AACTCAAAGG ACCAGACGAT 
    CTGCACATCA AGAGATGGAG CTTATCTCGA AAATGCGTCA TCCATTTATC 
    GTGGAATACA AAGACTCTTG GGTGGAAAAG GCTTGCTATG TGTGCATTGT 
    CATAGGTTAT TGTGAAGGAG GAGACATGGC ACAAGCTATC AAGAAATCCA 
    ATGGTGTGCA TTTTCAGGAA GAGAAACTGT GCAAGTGGCT TGTTCAGCTC 
    CTGATGGGCC TTGAGTACTT ACATTCTAAC CATATTCTTC ATCGTGATGT 
    CAAGTGTTCT AACATATTCT TGACCAAAGA GCAAGATATA CGCCTTGGTG 
    ATTTTGGGTT AGCCAAGATT CTAACATCCG ACGATCTCAC ATCCTCTGTT 
    GTCGGGACTC CCAGCTATAT GTGCCCTGAG CTTTTAGCTG ATATACCTTA 
    TGGTTCCAAA TCTGACATTT GGTCTTTAGG GTGCTGTATA TATGAAATGG 
    CTTATCTTAA GCCGGCATTT AAAGCATTTG ATATGCAAGC ACTGATTAAT 
    AAGATAAACA AGACGATTGT GTCTCCGCTC CCTGCCAAAT ATTCTGGTCC 
    ATTGTAAGTT TTGTTTTGCT TGTACCTTCA TATATATCTT TGTTTGTTTA 
    CAGTAATATT TTCTGAATCT TGTTTTTAGC CGAGGTCTCG TCAAAAGCAT 
    GCTGCGGAAA AACCCAGAAG TTCGGCCATC TGCCTCAGAT TTACTTAGAC 
    ATCCACATCT TCAGCCTTAT GTTCTGGATG TCAAGCTTAG GCTCAATAAT 
    CTTAGACGCA AAACATTACC GCCTGAGTTG CCGAGTTCCA AGAGGATTAT 
    GAAGAAAGCT CATTTTTCTG AACCAGCTGT CACTTGTCCA GCCTTTGGAG 
    AACGACAACA TAGGTCTCTC TGGAATGACA GAGCTCTGAA TCCAGAAGCT 
    GAAGAAGACA CTGCATCTTC TATTAAATGT ATTAGTCGCA GAATTTCAGA 
    TTTATCGATT GAGAGCAGCA GTAAAGGAAC ATTGATATGT AAGCAAGTTT 
    CTTCAAGTGC ATGTAAGGTC TCAAAGTATC CTCTTGCAAA ATCTTCAGTG 
    ACATCCAGAA GAATCATGGA AACTGGACGG AGATCCGACC ACTTGCATCC 
    GGTTTCAGGT GGTGGTACCA CCAGCAAGAT AATTCCATCA GCTCGCCGGA 
    CTTCTCTACC ACTCACGAAA AGAGCTACAA ACCAAGAAGT TGCAGCTTAC 
    AACCCAATAG TTGGGATCTT GCAGAATGTC AAGTCTCCAG AATATTCCAT 
    TAATGAGCCA CAAGTTGATA AGATTGCCAT TTTTCCATTA GCTCCATATG 
    AACAAGACAT CTTCTTTACT CCCATGCAAA GGAAAACATC GTCTAAAAGC 
    TCCTCTGTCT CAGACCGCTC TATAACAAAA GACAAATGCA CAGTTCAAAC 
    TCATACGACG TGGCAGGGAA TCCAACTCAA CATGGTAGAT AACATAAGCG 
    ACGGGTCATC ATCATCTGAT CAGAATGCAA CAGCTGGTGC ATCAAGCCAC 
    ACCACATCCT CTAGTTCAAG AAGATGTCGG TTTGACCCAT CATCGTATCG 
    TCAACGGGCT GATGCTTTGG AGGGGTTGCT TGAGTTTAGT GCCAGATTGT 
    TACAAGAAGG GAGATATGAT GAACTCAATG TATTGCTTAA GCCTTTTGGT 
    CCAGGAAAGG TGTCTCCCAG AGAAACCGCG ATATGGATCG CAAAGAGCTT 
    GAAGGAGAAT CGAGACAAGA CCAAAATGGT AGATCTAAAT GTTTCTAGAG 
    AGATACCACA TGTGGGTCTC CTCTGACAGG CTCCACATTG TCATAACGTT 
    CGGTTTAGTT CGGTTTTAGC AAAAAGAGAG AAGAGAAAGA ACTGGGTTAT 
    GCTTCTGGGA TTTGCAGGAG CTAGAGTTGG TTTAGGTTTA GTTTGATGGC 
    TGACACTTTT AAAAGATGAG TAACAGTATT AGTAGGTTGC GTTGGATGGT 
    CTTTGCTTTA GTCGAACCGG TAGCTTTGCA TTTGTAATCT GTACACTTGA 
    TAGTGTTAAC ACCTTTTATA ACTTGTATTA CTATAGACTT CATG

    Gene models with high sequence identity

    1. AT1G54510.3 [+] show detail - NIMA-related serine/threonine kinase 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Protein kinase, catalytic domain 41.305
    Gene3D no description 6.8e-16
    Gene3D no description 2.6e-45
    HMMSmart Serine/threonine-protein kinase domain 3.3e-59
    HMMSmart Tyrosine-protein kinase, catalytic domain 0.000000000075
    HMMPanther NIMA-RELATED PROTEIN KINASE, NEK 8.4e-113
    HMMPanther MAPKK-RELATED SERINE/THREONINE PROTEIN KINASE 8.4e-113
    HMMPanther SERINE/THREONINE PROTEIN KINASE 1.4e-140
    HMMPanther MAPKK-RELATED SERINE/THREONINE PROTEIN KINASE 1.4e-140
    HMMPfam Serine/threonine-protein kinase-like domain 8.1e-60
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    superfamily Protein kinase-like domain 7.1e-70

    See the detailed result >

    AT1G54510.3

    Model type
    Protein coding
    Short Description
    NIMA-related serine/threonine kinase 1
    Curator Summary
    Encodes AtNEK1, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.
    Computational Description
    NIMA-related serine/threonine kinase 1 (NEK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: NIMA-related kinase 2 (TAIR:AT3G04810.2).
    Link
    InterPro Scan - TAIR