F13049

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	increased size (PATO:0000586) (Rosette leaf::Shape::large) abnormal (PATO:0000460) (Rosette leaf::Others)
	root (PO:0009005)	present in greater numbers in organism (PATO:0000470) (Root::Number::many) abnormal (PATO:0000460) (Root::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)
T2
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13049

Determination of introduced cDNA(s)

RAFL06-13-I03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-13-I03 - Resource: pda03160

full reading [+] show sequence

AAAATATTAT TTAAATGTTA ATGTTGTTCT CTCGAATCAT TCCTTAAGAA 
AGATTTTCAC TTTCCAATTT GCTTCACTGT CTTGTCGATT CTGCTTCTCC 
AAAAAATTTC TTCTTTAGTT CTGAGTTTTT CTCTGTTCTG AAAAACCCCA 
AATTTTGTTT TTTTTGGCCA TTCAAAATTT CAGAAGAAGG CGATACAAAA 
TCGTCTTTGA ATTCTCTTTG TTTATGATCT GTTCAAGTAA AGGAACGGTC 
GTAATTGCTA CTAGAAGCTC ATTTCCCAGA TTACTAAACC GGATTCAAAA 
TCGAAATGAT GTTCCGATTA GTGTCATAGC TACTCGACGA TCATCAATGT 
CGGTGGAGGC GTTTCCGATG AGGTTAAAAT CATCACAGAA GAAGAGGAAG 
ATGAACATTG GTTGCGGTGT TTCCCCTTCT TCGCCGACGA CGACGGTGGT 
AGATGAGGAA GTAGCCATTA GGCGGAAATT GGCAATGAGA CGGGTTTTGG 
AGGATAACGG TGGCGATGGA AGCTCCGTCA GAGATTTCTC GCTATTCACG 
ACCAAGAGAG GTGACACGTT GTTCACTCAG TCATGGACTC CTGTTGACTC 
CGCTAAGAAC AGGGGACTTG TTGTTCTGCT TCATGGTCTG AACGAACACA 
GTGGCAGGTA TAGTGATTTT GCAAAGCAGC TAAATGTAAA TGGATTCAAG 
GTCTATGGAA TAGATTGGAT CGGTCATGGT GGAAGCGATG GACTTCATGC 
TTACGTTCCT TCTCTTGATT ATGCTGTCGC TGATTTGAAA TCGTTTATTG 
AGAAGGTAAT TGCGGAAAAC CCGGGATTGC CCTGTTTCTG CATTGGCCAC 
TCAACAGGAG GAGCCATCAT CTTAAAGGCT ATGCTAGATG CAAAGATTGA 
AGCTCGAGTT TCAGGGATTG TGCTAACTTC ACCCGCAGTT GGAGTCCAAC 
CAACTTATCC TATCTTCGGC GTAATTGCAC CATTCCTCTC GTTCCTCATA 
CCGAGATATC AGTTAAGTGC TGCGAAAAAG AAAATAATGC CGGTTTCTCG 
TGACCCGGAA GCTCTATTGG CTAAATACTC TGACCCGCTA GTCTACACTG 
GATTTATCCG AGCAAGAACC GGTAACGAGA TCCTTAGACT TGGTGCTCAT 
TTACTGCAGA ATCTGAACAG AATCAAGGTT CCGTTTCTTG TGATGCACGG 
CACAGCTGAT ACAGTTACTG ATCCTAAAGG TACTCAGAAG CTATACAATG 
AGGCTTCCTC ATCCGATAAG TCGATCAAGC TGTACGACGG GTTGTTACAC 
GATCTGCTCT TTGAACCAGA ACGGGAAACT ATAGCTGGAG TCATATTGGA 
TTGGCTAAAC CGGCGGGTTT AAATTCCTCA AACCAAATGT AGCACAGTTC 
CTTACTCCTT AGGTAATATA GAGGGATATG CGAAAGACAT AATCAATAGT 
TCCTCTGTTT CTGTCGATTG ATCTCGACAC TATTTTGACA TTACGCACAC 
TTTTATTGTA ATGAATATAC GATGTTGTAA CC

Gene models with high sequence identity

AT1G18360.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	LYSOPHOSPHOLIPASE	4.3e-141
HMMPanther	PHOSPHOLIPASE-RELATED	4.3e-141
Gene3D	no description	7e-31
HMMPfam	Hydrolase_4	1.6e-26
superfamily	alpha/beta-Hydrolases	8.6e-48

See the detailed result >

AT1G18360.1

Model type: Protein coding
Short Description: alpha/beta-Hydrolases superfamily protein
Computational Description: alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G73480.1); Has 6456 Blast hits to 6448 proteins in 1759 species: Archae - 38; Bacteria - 4736; Metazoa - 147; Fungi - 149; Plants - 444; Viruses - 63; Other Eukaryotes - 879 (source: NCBI BLink).
Link: InterPro Scan - TAIR