F13109

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13109

Determination of introduced cDNA(s)

RAFL16-66-K19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-66-K19 - Resource: pda10159

full reading [+] show sequence

CTTAGCCAAC AAAAAATGGC AGAACTTATT CCTTGGTACT ACACTTCAGG 
GTCAGGGATC GTACTTGTAC TTCAAACCAT TTTTCTCTTC TCGATCGTAC 
GTGCTGATTT ACCAGGCTCA TGGGAACTCA TTGTACAAGA CGCCGGTATA 
GCTTCTATGC ACACGGCGGT GACCCGGTTC AACACGGTCA TCCTTCTAGA 
CCGAACTAAC ATCGGACCGT CGAGAAAGGC TCTTGACCGT CACCGGTGCC 
GGAGAGACCC AAAAGACGCC GCTTTGAAAC GCGATTGTTA CGCTCACTCG 
GTTCTGTTCG ACCTTGGTAC AAATCAGATC AGACCACTGA TGATACAAAC 
CGACACGTGG TGCTCGTCGG GCCAGTTTTT ATCCGACGGA TCGTTGCTAC 
AAACGGGTGG GGATAAAGAC GGGTTTAAAA AGATACGTAA ATTCGAACCC 
TGTGACCCGA ACGAAACGTG CGATTGGGTG GAGCTTCAAG ATACCGAATT 
GATAACCGGA CGCTGGTACG CTTCTAACCA GATATTACCG GATGGTTCGG 
TTATCATCGT CGGTGGTAGA GGAACTAATA CGGTTGAGTA TTACCCTCCA 
CGCGAAAACG GTGCCGTTCC GTTTCAGTTT CTTGCTGACG TGGAAGACAA 
ACAAATGGAT AATCTCTATC CGTACGTTCA TCTCCTCCCC GACGACGACG 
GTGGCAATCT CTTCATCTTC GCCAACAGTC GCGCCGTTAA ATACGATCAC 
CGGATAAACG CCGTCGTGAA AGAGTATCCA CCGTTAGACG GTGGTCCGAG 
GAATTATCCG TCAGGTGGAT CATCGGCGAT GCTAGCTATC CAAGGAGATT 
TCACCACAGC GGAGATTCTA ATCTGCGGCG GAGCACAATC CGGAGCCTTC 
ACAGCGCGTG CAATTGATGC TCCGGCGCAT GGAACCTGCG GACGAATCGT 
AGCTACCGCG GCGGATCCTG TTTGGGTGAC GGAGGAGATG CCGTTCGGGA 
GAATCATGGG AGATATGGTG AATTTACCGA CGGGAGAGAT TCTGATCATA 
AACGGAGCTC AAGCCGGAAG CCAAGGATTC GAAATGGGAT CCGATCCGTG 
TTTATACCCG CTTTTATACC GACCCGATCA ACCAATTGGT TTACGATTCA 
TGACGTTGAA CCCAGGAACT GTACCGAGAA TGTACCATTC CACGGCGAAT 
CTTTTACCGG ACGGTAGAAT TCTTCTCGCC GGAAGCAATC CTCACTATTT 
CTACAAATTC AACGCCGAAT TCCCAACGGA GCTACGGATC GAAGCGTTTT 
CACCGGAGTA TCTGTCACCG GATCGAGCTA ATCTCCGACC AGAGATCCAA 
GAAATCCCGC AGATCATACG GTACGGAGAG GTTTTCGACG TGTTCGTGAC 
CGTGCCGTTG CCGGTGGTGG GGATAATTCA GATGAATTGG GGAAGTGCGC 
CTTTTGCGAC TCATTCGTTT TCTCAAGGTC AACGGCTCGT TAAGTTGACC 
GTTGCTCCGT CTGTGCCTGA CGGAGTAGGT CGTTATAGGA TTCAGTGTAC 
GGCTCCACCT AACGGCGCCG TTTCTCCGCC TGGGTATTAT ATGGCCTTCG 
CTGTTAACCA GGGAGTTCCT AGCATTGCTC GATGGATACG AATAGTTTCT 
TGATTTAAAA CCAGAGGAGA TATTTAAAAT GTTAATTTGT TAAATAGTTA 
AACACATCAT GTAATATAAA TATTTTCATG GAAAAACTTA CTCCGCAAAG 
T

Gene models with high sequence identity

AT3G53950.1 [+] show detail - glyoxal oxidase-related protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	Galactose oxidase, beta-propeller	1.4e-91
Gene3D	Immunoglobulin-like fold	4.2e-19
HMMPfam	Glyoxal oxidase, N-terminal	5.5e-109
HMMPfam	Domain of unknown function DUF1929	2.3e-24
superfamily	Galactose oxidase/kelch, beta-propeller	3.7e-41
superfamily	Immunoglobulin E-set	3.6e-27

See the detailed result >

AT3G53950.1

Model type: Protein coding
Short Description: glyoxal oxidase-related protein
Computational Description: glyoxal oxidase-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin E-set (InterPro:IPR014756), Glyoxal oxidase, N-terminal (InterPro:IPR009880), Domain of unknown function DUF1929 (InterPro:IPR015202); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related protein (TAIR:AT1G75620.1); Has 849 Blast hits to 839 proteins in 169 species: Archae - 0; Bacteria - 325; Metazoa - 1; Fungi - 246; Plants - 262; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link: InterPro Scan - TAIR