F13111

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13111

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13111

Determination of introduced cDNA(s)

  • RAFL09-90-P06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-90-P06 - Resource: pda06954

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-90-P06 - full reading
    ACGACACTCG CAACTTCTTC CTTATCGACA CCTACACTCT CCTGCTACAA 
    TGGCGACTTT CCTAACAAAT GTTGTTTCAA TCAAACCTAC AATCTTCTCA
    TTCCAGTCCG AATCCTTCAC TCCTTTGCAT ACACGGGTCA ATGTATTCTC
    CTCGAAACCC TTTCCTTCTC TCGCTGGAAC TTTCTCCCGG AGCTCTAGAA
    CGAGATTCAT TCCTTATGCT GTAACGGAGA CGGAAGAAAA ACCCGCCGCT
    TTGGACCCTA GTTCAGAAGC TGCCAGGCGT GTGTATATCG GTAACATACC
    CAGGACGGTG ACCAATGAGC AGCTCACTAA ACTTGTTGAA GAACACGGTG
    CTGTTGAAAA AGTTCAGGTG ATGTATGATA AGTATTCAGG AAGAAGCCGT
    CGATTTGGGT TTGCTACAAT GAAATCAGTT GAAGATGCTA ATGCTGTGGT
    TGAGAAATTG AATGGCAATA CCGTTGAAGG GCGTGAGATA AAGGTTAACA
    TTACAGAGAA ACCTATAGCA TCATCACCTG ATTTATCAGT TCTTCAGTCT
    GAGGATTCAG CATTTGTAGA TAGCCCTTAC AAAGTGTATG TTGGGAATCT
    AGCAAAGACT GTTACAAAAG AGATGCTTGA GAATTTGTTT TCTGAGAAAG
    GGAAAGTAGT AAGTGCTAAG GTTTCAAGAG TACCTGGAAC TTCCAAATCC
    ACCGGGTTTG GATTCGTTAC GTTTTCTTCT GAAGAAGATG TGGAAGCAGC
    CATTGTTGCT CTTAACAATT CGTTGCTGGA AGGACAGAAG ATTCGGGTGA
    ATAAGGCTTA GCCTATTGGA TCATAAAGAA TGTGAAAAGA ATCGCTTTGA
    AGAGTTTTTG TAATGCAAAT CATTAGAGCT TAGTGTATCA TCTTGTATTC
    ATTCTAAGTT GAAAATGAAA CCATATCTTT TCAAAAGCTT ATAGTTGTGG
    TAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT3G52150.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RIBONUCLEOPROTEIN, CHLOROPLAST 9.1e-85
    HMMPanther RNA-BINDING PROTEIN 9.1e-85
    HMMPfam RNA recognition motif, RNP-1 1e-18
    HMMPfam RNA recognition motif, RNP-1 5.5e-21
    HMMSmart RNA recognition motif, RNP-1 4.7e-24
    HMMSmart RNA recognition motif, RNP-1 9.5e-26
    superfamily RNA-binding domain, RBD 4.8e-23
    superfamily RNA-binding domain, RBD 9.3e-23
    Gene3D Nucleotide-binding, alpha-beta plait 1.5e-21
    Gene3D Nucleotide-binding, alpha-beta plait 1.5e-23
    ProfileScan RNA recognition motif, RNP-1 18.308
    ProfileScan RNA recognition motif, RNP-1 18.973

    See the detailed result >

    AT3G52150.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 33 (TAIR:AT3G52380.1); Has 994423 Blast hits to 498842 proteins in 22080 species: Archae - 21562; Bacteria - 603611; Metazoa - 187119; Fungi - 27426; Plants - 59617; Viruses - 70898; Other Eukaryotes - 24190 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR