F13116

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13116

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13116

Determination of introduced cDNA(s)

  • RAFL04-20-D01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-20-D01 - Resource: pda00561

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-20-D01 - full reading 
    AAAAAAAAAA AAAAAAAAAC ATCCAACACC AAAGACAATG GAGATGAGTT 
    TGCGTCTCGC TTCATCTTCA ACCTCAAACC CAATTTGTCT ACTAAACCCT 
    GGAAAAAACC TTAATTTCCC AATCCGAAAC CATAGAATCC CTAAAACTTC 
    GAAACCCTTT TGCGTTAGGT CTTCAATGAG CTTGTCTAAA CCACCCAGAC 
    AAACCTTATC TAGTAACTGG GATGTATCTA GCTTCTCCAT TGATTCCGTT 
    GCTCAATCTC CTTCAAGACT CCCAAGTTTC GAAGAACTCG ATACCACCAA 
    CATGTTGCTC CGTCAAAGAA TCGTCTTTTT GGGTTCTCAG GTTGATGATA 
    TGACGGCGGA TTTGGTTATA AGTCAGCTAT TGTTACTAGA TGCTGAGGAC 
    TCAGAAAGAG ACATTACGCT TTTTATCAAT TCACCCGGTG GATCTATTAC 
    TGCTGGGATG GGAATATATG ATGCAATGAA ACAATGTAAG GCGGATGTAT 
    CTACTGTTTG CTTAGGGTTA GCTGCATCTA TGGGTGCGTT TCTTCTTGCT 
    TCTGGTTCAA AAGGGAAACG GTATTGTATG CCTAACTCTA AAGTTATGAT 
    CCATCAGCCA CTTGGTACTG CTGGAGGCAA AGCAACGGAA ATGAGCATAC 
    GTATAAGAGA AATGATGTAC CACAAGATTA AACTTAACAA AATCTTCTCT 
    AGAATCACTG GGAAGCCTGA ATCAGAGATC GAAAGTGACA CAGACCGTGA 
    TAACTTCTTG AATCCATGGG AGGCGAAAGA ATATGGTTTG ATCGACGCTG 
    TAATCGATGA TGGGAAACCG GGACTAATCG CTCCAATTGG AGATGGTACT 
    CCTCCTCCTA AAACCAAAGT CTGGGATCTT TGGAAAGTCG AAGGAACCAA 
    GGAAGACAAC ACTAACTTGC CATCTGAGCG CTCCATGACA CAGAATGGTT 
    ATGCCGCCAT TGAATAGAAC TGTTGTTGCA GCGTTTACGC CTTTTATATG 
    TTATTCTGGT GGTACCTGTA ACCATATAAC GTTGCATTTC CTGTGTTTGT 
    ACCATTTCTC TGATAGATTT TTGGAATAAT TTGAAGGCAA AAGATAGATT 
    ATTTGTTG

    Gene models with high sequence identity

    1. AT1G66670.1 [+] show detail - CLP protease proteolytic subunit 3
      E-value: 0; Score: 99.91

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Peptidase S14, ClpP 7.4e-71
    HAMAP CLPP_MF_00444 36.161
    HMMPanther Peptidase S14, ClpP 5.2e-81
    Gene3D no description 1.6e-62
    superfamily ClpP/crotonase 1.2e-48
    FPrintScan Peptidase S14, ClpP 1.3e-46
    FPrintScan Peptidase S14, ClpP 1.3e-46
    FPrintScan Peptidase S14, ClpP 1.3e-46
    FPrintScan Peptidase S14, ClpP 1.3e-46
    FPrintScan Peptidase S14, ClpP 1.3e-46
    PatternScan Peptidase S14, ClpP, active site 0
    PatternScan Peptidase S14, ClpP, active site 0

    See the detailed result >

    AT1G66670.1

    Model type
    Protein coding
    Short Description
    CLP protease proteolytic subunit 3
    Curator Summary
    One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
    Computational Description
    CLP protease proteolytic subunit 3 (CLPP3); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease P4 (TAIR:AT5G45390.1); Has 13369 Blast hits to 13367 proteins in 2989 species: Archae - 6; Bacteria - 8381; Metazoa - 147; Fungi - 79; Plants - 1070; Viruses - 92; Other Eukaryotes - 3594 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR