F13209

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13209

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
T3 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F13209

Determination of introduced cDNA(s)

  • RAFL05-04-M23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-04-M23 - Resource: pda00853

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-04-M23 - full reading 
    ATCTTCTTCC TCATCTTTCT TCTCTCTTCA ACATTTTCTT CTCTTCTTCA 
    CACAAACACA CACAGATCTC TTCTTCATCA CATTACTTCT GGCTTTACAT 
    CTTTTTTCTT CTCCATGAGG AAAGGGAGAG GCTCTTCCGT CGTTGGACCC 
    GCCCTTCCAG TAACCGCCGG TGGATCTGTG AAGGAGCCGA GGTATAGAGG 
    CGTTAGGAAG AGACCTTGGG GTCGATTCGC AGCTGAGATC CGTGATCCAT 
    TAAAAAAATC TCGTGTCTGG CTCGGTACTT TCGATTCCGC CGTAGATGCT 
    GCACGCGCTT ACGATACCGC CGCACGTAAC CTCCGTGGTC CAAAGGCCAA 
    GACCAATTTC CCGATCGATT GTTCTCCTTC TTCTCCTCTC CAACCTCTCA 
    CCTACCTCCA CAATCAAAAC CTCTGTTCTC CTCCGGTGAT TCAGAACCAG 
    ATCGATCCGT TTATGGACCA TCGGTTATAC GGCGGAGGTA ATTTCCAGGA 
    GCAGCAGCAG CAGCAGATTA TTAGTCGGCC GGCGAGTAGC AGCATGAGCA 
    GCACCGTTAA ATCTTGTAGC GGACCGAGAC CGATGGAAGC CGCGGCGGCG 
    TCTTCGTCGG TGGCGAAACC GTTACATGCG ATTAAGAGAT ATCCGAGAAC 
    TCCACCGGTA GCTCCGGAGG ATTGTCATAG CGACTGCGAT TCTTCGTCGT 
    CTGTTATTGA CGACGGAGAT GATATCGCAT CTTCGTCTTC CCGCCGGAAA 
    ACGCCGTTTC AGTTTGATCT TAATTTCCCG CCGTTGGATG GCGTTGACTT 
    ATTCGCTGGC GGGATAGATG ATCTCCACTG TACCGATCTA CGTCTCTGAT 
    TTGCTGCTTT ACAAAAAAAA TCCGTTGATT ACACACAAAA AAAATTCTCA 
    AATTTTACAA AATGATAACT TTATGCTCTT TTGTTTTTCC ATTTTCCTTT 
    GATATCATAT TGAAAGAGAA AAAAAGGAAG AACAAAAAAA AAAGATTGAG 
    CGTGATGATT TTATCATCAA CGAAGATGAT GACGATTAAA AAGAGAGAGA 
    GATTGTGTTA AGATCTGTTA CTGTAAGAAC CAGATCTGGG TTTCATTTTT 
    ATCTGTTTCT TCTTATAAAA GATCCAACAA CCCTTTGTTA CATATATATA 
    ACATTCTGAA GCTGGTGATG ATTTCTGAAT GATTCAAATC CATTATCTTT 
    AGATTTCTAC TTATTCATAG AGTGTCCCCT GATGTAAGTA GGAAGCTGCA 
    TTTACATAGT ATGTAACAGA ACCACACAGG GCACAAGTAT TTGTTTGTGT 
    TTTGTCTCTT GGCTTGATCT TGATCAATTC AGGGTTTCTT CTATTCAACA 
    AGTAAAGCTT AGTGGTTCTC TGAGATGGAA GCAATAAAAA GATGAAAGGA 
    AGAAAGACGG TGAAGCTCCT TTGCTATCTA ATTGGGTGAT TCGAAGAGGA 
    AGTTAGAATA CTCATTGTCA TTGTTAAGCC TCAAGTTTTC ATTCATCAGC 
    GAGGAGACAA GAAAGGCTTT CCCTTTTGTG TACCCAATGA ATATTTTGGA 
    TGGTGAAGAA CATAGAGATT AAGGGCATGG TCAATGGGCG GTGAGTGGTT 
    TTGTTGTGAT CGATAAAGCT CAATGAGCAC AGGCCAAATC TTTAGGTTAA 
    AGTTTGGTGG CTGAGATGAT TGTTTTGATC TTTAAGAGCT GTGGGTTGAG 
    GTGGCAGAAT TCGTTGTGTG TTTGACCTTT TTGATTTGAA TTTGCTGGTA 
    GAGAGTTTTC CCAATTTTGG TATCTACTTT GCTTCTATGC CACGGATTCA 
    GACAGTGAAT CTTTGTGTCT GAAGCAAAAA CCGAGTATTT TTTTACCGTT 
    TTGGGGTAGG CTTCTTCTTA ACTTAAAGTG GAAGTCAAAA GCAATGTCTT 
    GTTATTTTCA CTGTAACGAT TTAAGACAAC TGATCTCAAG TCGCTTTTCC 
    TGTTTCGGTT CGTACTCTTA ATAATCTTCT ATTATTCTGG AGTTGAGATT 
    G

    Gene models with high sequence identity

    1. AT3G20310.1 [+] show detail - ethylene response factor 7
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 5.3e-23
    ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 22.985
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.4e-09
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.4e-09
    HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.2e-37
    HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 3.7e-15
    superfamily DNA-binding, integrase-type 4.3e-23

    See the detailed result >

    AT3G20310.1

    Model type
    Protein coding
    Short Description
    ethylene response factor 7
    Curator Summary
    Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-7). The protein contains one AP2 domain. Phosphorylated by PKS3 in vitro. Involved in ABA-mediated responses. Acts as a repressor of GCC box
    Computational Description
    ethylene response factor 7 (ERF7); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene responsive element binding factor 3 (TAIR:AT1G50640.1); Has 5826 Blast hits to 5594 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5816; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR