F13247

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13247

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13247

Determination of introduced cDNA(s)

  • RAFL05-19-G13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-19-G13 - Resource: pda07435

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-19-G13 - full reading
    CTGGCTGCAA AAATATCATC AATAGCGAAA AGTCGCTTCT TTTTTCTTCT 
    TCCAAAATCT TTAATTTTGT GAAACCGAAG AGATAAGACG TGGAGAAAAG
    CAGACGTCTC TGTTGTTTGT TTTTGATTCA TCGGGTTCTA AGGATTTGTC
    TGTTTCCAAG ACACAAACTT TGGATTCTCT TCTCTTCCTG TTCGTCTTCT
    CTTGTCTTGA TCCTTTTGTT ATCATCATCA TCTCTTCATC GAGAGAAGAG
    AGACGAGATT AGGGATTTAA GTTAAGGAGG ATGTATTATC AGTTGACCAA
    GTCTTCTTAC AGAGACTCTT TGAAGATTCT GGAGGCTGAT ATTGAGCACG
    CCAATGGACT GTGAGTCATC CTCTGATTCT TTCTGGGTTC TTTGATTTTT
    ACTGGGTTTA GGGTCTTTAG TATCGATTGT TATAGTTGGC TTCGATGATT
    TAGGGTTTAG GGCCCCACAA TTTTACATTT TCGGTCGTTA TCACGAACTT
    AGATTATTAA AAATCGAAAC TTTGCAGAAA TGGTCAAAAA ATTGCTAAAT
    TTTGTGGCAT GCGTGGTGTG GTCTTGATGC ATATGTTGTC TGAAGAAATG
    GGTTAAATGT GATTAGAAGG ATGGTAACTG AATAGTCTCA CAATTTGTAT
    ATCTGTGGTG TGGTATTGAT GCATATGTTG TCTGTGGAAA TGGTTTATGT
    GATTCGAAGG ATATAGTAAC TGCTTAGTCT CAGAATTGGT ATCTGTGTGG
    TTTGTTCTTC AGGCATATGT TGTCTGAAGG GATGGGTTAT GTTAGAAGGA
    TTAGTGTAAT GACTGATTAC TCTCAAATTT GATTCAGGGC TGCTGAGATT
    CCAATGGGAA AGAGCGGTGT GCGACTTCAG ATGAAATTGG TGTGCAGCAA
    TTTGGCTCCA TTCTTCATAT TCCTGCTACA ATGGATGGAT TTCTCATGTC
    TGCTTCCAAG ATATTTTGAT TTCTTCCACA TACTCATATA CAAGGTTGTT
    ACCGCATACA TAGATATCGA GTTGTGTGTG TGTGTGTGTG AAATGGTAGA
    TTCCCTGATA GTTTCTCTCC TTTCCTCTTG GCTTGTTTGT TTTATAGGTG
    TCTTCTTTGT CTTGTACAGG TACGTGCTGA TGGGCGGTGG AATCGATCTA
    GGTACGGAAG GAAAGCTACG ATTAGGGAGT TTTACGGTGT TATATTACCA
    TCACTTGAGC GACTTCATAT CAACTTTGCT GACTTACCGG ACGAAAGCTT
    GTGGTATCCG AATCCAAAAG CCATCACCAA GAAGCAGTAT GACATTGAAG
    GTAGCAGATA CATGAATAGC ATTGACTTGG AAAGAGAAGA CGAATGCGGG
    ATTTGCTTAG AGCCTTGCAC CAAAATGGTG TTGCCAAACT GTTGTCATGC
    CATGTGCATC AAATGTTACC GTAACTGGAA CACAAAGTCG GAGTCATGCC
    CGTTTTGTCG TGGCAGCATC AAGAGAGTGA ACTCAGAGGA TCTGTGGGTG
    CTAACTTGCG ATGAAGATGT GGTGGATCCA GAGACGGTCA CCAAAGAGGA
    TCTTCTTCGG TTCTACCTCC ACATCAATAG CCTTCCTAAG GATTATCCAG
    AAGCGGCCTT CTTAGTCTAC AACGAGTACT TGATATGATT TTATCCCGAA
    ACATAAATAC GGGTGTACAG AGGGAGAGAG TGATCCCAGA CCTTTGATTA
    AGTGTACATA AGAATCTGGT GATCCATTAA TGTTCCTTCG TTTTAGATTA
    TGATTTATGA AGATTGTCAT AATCTTAATG TGTACCCCTT TTATTATCAA
    AGATCAAATG AGAAAGATGA TCTTCGAAAA AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT1G24440.1 [+] show detail - RING/U-box superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, RING-type 11.722
    superfamily RING/U-box 0.0000000000018
    HMMSmart Zinc finger, RING-type 0.00084
    PatternScan Zinc finger, RING-type, conserved site 0
    Gene3D no description 0.0000082

    See the detailed result >

    AT1G24440.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G13195.1); Has 869 Blast hits to 869 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 288; Fungi - 71; Plants - 339; Viruses - 31; Other Eukaryotes - 140 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR