F13303

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13303

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F13303

Determination of introduced cDNA(s)

  • RAFL09-20-J02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-20-J02 - Resource: pda08007

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-20-J02 - full reading 
    AGAGATTTTG ACTCTGAATT GTTGCAGATA GCAATGGCGT CTGGAGCAGT 
    AGCAGATCAT CAAATTGAAG CGGTTTCAGG AAAAAGAGTC GCAGTCGTAG 
    GTGCAGGTGT AAGTGGACTT GCGGCGGCTT ACAAGTTGAA ATCGAGGGGT 
    TTGAATGTGA CTGTGTTTGA AGCTGATGGA AGAGTAGGTG GGAAGTTGAG 
    AAGTGTTATG CAAAATGGTT TGATTTGGGA TGAAGGAGCA AACACCATGA 
    CTGAGGCTGA GCCAGAAGTT GGGAGTTTAC TTGATGATCT TGGGCTTCGT 
    GAGAAACAAC AATTTCCAAT TTCACAGAAA AAGCGGTATA TTGTGCGGAA 
    TGGTGTACCT GTGATGCTAC CTACCAATCC CATAGAGCTG GTCACAAGTA 
    GTGTGCTCTC TACCCAATCT AAGTTTCAAA TCTTGTTGGA ACCATTTTTA 
    TGGAAGAAAA AGTCCTCAAA AGTCTCAGAT GCATCTGCTG AAGAAAGTGT 
    AAGCGAGTTC TTTCAACGCC ATTTTGGACA AGAGGTTGTT GACTATCTCA 
    TCGACCCTTT TGTTGGTGGA ACAAGTGCTG CGGACCCTGA TTCCCTTTCA 
    ATGAAGCATT CTTTCCCAGA TCTCTGGAAT GTAGAGAAAA GTTTTGGCTC 
    TATTATAGTC GGTGCAATCA GAACAAAGTT TGCTGCTAAA GGTGGTAAAA 
    GTAGAGACAC AAAGAGTTCT CCTGGCACAA AAAAGGGTTC GCGTGGGTCA 
    TTCTCTTTTA AGGGGGGAAT GCAGATTCTT CCTGATACGT TGTGCAAAAG 
    TCTCTCACAT GATGAGATCA ATTTAGACTC CAAGGTACTC TCTTTGTCTT 
    ACAATTCTGG ATCAAGACAG GAGAACTGGT CATTATCTTG TGTTTCGCAT 
    AATGAAACGC AGAGACAAAA CCCCCATTAT GATGCTGTAA TTATGACGGC 
    TCCTCTGTGC AATGTGAAGG AGATGAAGGT TATGAAAGGA GGACAACCCT 
    TTCAGCTAAA CTTTCTCCCC GAGATTAATT ACATGCCCCT CTCGGTTTTA 
    ATCACCACAT TCACAAAGGA GAAAGTAAAG AGACCTCTTG AAGGCTTTGG 
    GGTACTCATT CCATCTAAGG AGCAAAAGCA TGGTTTCAAA ACTCTAGGTA 
    CACTTTTTTC ATCAATGATG TTTCCAGATC GTTCCCCTAG TGACGTTCAT 
    CTATATACAA CTTTTATTGG TGGGAGTAGG AACCAGGAAC TAGCCAAAGC 
    TTCCACTGAC GAATTAAAAC AAGTTGTGAC TTCTGACCTT CAGCGACTGT 
    TGGGGGTTGA AGGTGAACCC GTGTCTGTCA ACCATTACTA TTGGAGGAAA 
    GCATTCCCGT TGTATGACAG CAGCTATGAC TCAGTCATGG AAGCAATTGA 
    CAAGATGGAG AATGATCTAC CTGGGTTCTT CTATGCAGGT AATCATCGAG 
    GGGGGCTCTC TGTTGGGAAA TCAATAGCAT CAGGTTGCAA AGCAGCTGAC 
    CTTGTGATCT CATACCTGGA GTCTTGCTCA AATGACAAGA AACCAAATGA 
    CAGCTTATAA CATTGTCAAG GTTCGTCCCT TTTTATCACT TACTTTGTAA 
    ACTTGTAAAA TGCAACAAGC CGCCGTGCGA TTAGCCAACA ACTCAGCAAA 
    ACCCAGATTC TCATAAGGCT CACTAATTCC AGAATAAACT ATTTATGTAA 
    AAG

    Gene models with high sequence identity

    1. AT5G14220.1 [+] show detail - Flavin containing amine oxidoreductase family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily FAD/NAD(P)-binding domain 1.9e-35
    superfamily FAD/NAD(P)-binding domain 0.00089
    FPrintScan Adrenodoxin reductase 5.4e-06
    FPrintScan Adrenodoxin reductase 5.4e-06
    HMMPanther AMINE OXIDASE 1.3e-21
    HMMTigr Protoporphyrinogen oxidase 5.7e-64
    Gene3D no description 4.6e-10
    Gene3D no description 3.4e-55
    HMMPfam Amine oxidase 2.7e-53

    See the detailed result >

    AT5G14220.1

    Model type
    Protein coding
    Short Description
    Flavin containing amine oxidoreductase family
    Curator Summary
    Encodes PPO2, a putative protoporphyrinogen oxidase based on sequence homology. Also known as MEE61 (maternal effect embryo arrest 61). mee61 mutant shows arrested endosperm development.
    Computational Description
    HEMG2; FUNCTIONS IN: oxygen-dependent protoporphyrinogen oxidase activity; INVOLVED IN: porphyrin biosynthetic process, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Adrenodoxin reductase (InterPro:IPR000759), Protoporphyrinogen oxidase (InterPro:IPR004572); BEST Arabidopsis thaliana protein match is: Flavin containing amine oxidoreductase family (TAIR:AT4G01690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR