F13325

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	stem (PO:0009047)	present in fewer numbers in organism (PATO:0001997) (Stem::Number::few)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased width (PATO:0000599) (Cauline leaf::Shape::narrow)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) abnormal (PATO:0000460) (Rosette leaf::Others) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	flower (PO:0009046)	abnormal (PATO:0000460) (Flower::Others)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13325

Determination of introduced cDNA(s)

RAFL15-14-A05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL15-14-A05 - Resource: pda19175

full reading [+] show sequence

TGGTTTTGTT TTTGAATCAG ATCCTTATTC TTGACCTTTC GATCAGATTC 
ATGGCAACGA CTCAATCACA CACCTCAGAT CTTACTTCAG AGGAGCAACC 
TGCTAGTTTG GACATCATGA AGGAGCAGAC TGTCCCGGCA AACAACGAGA 
CATCAGCCTC TTTTAAGTCC TCCCAGGAAG CTCCAGTTGT AGTTCATCCA 
GCAAAAGTTG CTCCACTTAC TGGACCTTAT GGTTTAGCCG GTGATTTTGC 
CGGACACTTA CCTAGCAGCA TCCTCTCTCC TCAAGCACAA GGCTTTTACT 
ATAGAGGTTA TGAAAACCCC ACAGGCGAAT GGGACGAGTA TTCCTCGTAT 
GTCAATGTTG AAGGATTGGA CATCACATCT CCTGTTGGCT TCAATGAGAA 
TGCTTCTCTG GTCTACCAAA CGGGATATGG ATACAACCCT CAAATGCCAT 
ATGGGCCATA TTCCCCTGCA GCAAGTCCCT TGCCTTCTGA GGGACAGTTG 
TATTCTCCAC AACAGTTTCC GTTTTCAGGG GCATCACCGT ATTACCAGCA 
GGTAGTTCCT CCTAGCATGC AATATATTAC TTCTCCAACT CAGCCCGAGC 
TCACCAGCCT TGTCGGTGTT GACCAACAAG GTGATAACAT CGGACCACGC 
CAATCCTACC ATCCTCATCC CATTGGACCG TTTAATGGAA ACCAGCCAAA 
CCTTGGTTTT CCTGAATGGC AGCAAGGTTT TGACGGGGGA ATATGGTCGG 
ATTGGTCCAA GCCTTCTGAT ATGCACAGGC ATTCTTCTTC TATTTCTCCG 
GCTTTATCTC CTCAGCCACT CGGCTCATAT GGATCATATG GCCAGAACAT 
ACCCATGGGG TCACAGCGAC AGAGATCATT TTACGGTTTT GGATCTGGTT 
CGAACTCTTA TAACAGAGGT TATATGCATA GTGGTGGTCG TGGCCAGGGT 
TCTAACTATG GAAGTAGACT AATTTCTAAT GTGGGTATGG GAAACCAAGG 
CTGGATTGGG GTTGACAACA GTCGAGGGCG TGGAAGGGTT AGTGATCCAT 
CTTTGGGTGG TGCTTATAAT GGTACTTTTG ATATCCTCAA TGAGCAAAAT 
CGAGGACCAA GGGCTTCAAA GCCCAAGACT CAGGTCTTAG AGGAGCTTGA 
TTCTGCTGCT GATTCTAAGA AAAATAACAA AGGCAGTGCA AAGGAGCACG 
AGGAATCCAA CAACGCAGAC TTTGTCACCG ACTACACTAA CGCCAAGTTG 
TTCATCATCA AGTCTTACAG TGAAGACAAT GTTCACAAAA GCATCAAATA 
CAATGTATGG GCTAGCACCC CTAATGGCAA CAAAAAGCTT GACGCTGCTT 
ATCGTGAGGC CAAGGATGAG AAAGAACCGT GTCCACTTTT TCTTCTGTTC 
TCGGTAAATG CGAGCTCTCA ATTCTGTGGT GTAGCAGAGA TGGTTGGACC 
TGTTGATTTT GAGAAGAGCG TTGATTACTG GCAACAAGAT AAATGGAGTG 
GACAGTTCCC AGTGAAGTGG CACATTATCA AAGATGTTCC AAACAGCCAG 
TTCCGCCACA TTATATTGGA AAACAATGAC AATAAGCCTG TGACTAATAG 
TCGAGACACC CAAGAAGTAA AACTGGAACA GGGCATCGAG ATGCTGAAGA 
TCTTCAAGAA CTACGACGCT GACACGTCAA TCTTGGATGA TTTCGGGTTT 
TATGAAGAGC GGGAGAAAAT TATACAAGAC CGGAAGGCAA GAAGACAGCC 
AAGCTTGCCA TCTGCAGGAG TAGTAGCAGG AGAAAATGAA CATAAACCTG 
CTTCTGCTGC ATTACCCACA GACTTCATGA AGAACATGTC CAAGAGTTTT 
GCGCAAGTTG TCCGCTTGGA CGAAGGCAGC AAAGAAGCAG TCAAGGCCAG 
TTCATCTCCA GATGCAATTA CAACAGCAGC AGTCTCTTCT GGTCAATCCA 
ACTAGTAAGT AAAAGACATC AATTAGCAAA GACTATGTTT TCAAATTCCA 
TAATATGATC TTTTGTTTGT TCTAAGAAGG TATTTCAAAC GAAAAAAAAA 
A

Gene models with high sequence identity

AT3G13060.2 [+] show detail - evolutionarily conserved C-terminal region 5
E-value: 0; Score: 99.95

InterPro Scan Digest

Program	Description	E-value
ProfileScan	YTH domain	50.402
HMMPfam	YTH domain	1.6e-29
HMMPanther	YTH DOMAIN-CONTAINING	5.1e-112
HMMPanther	YTH domain	5.1e-112

See the detailed result >

AT3G13060.2

Model type: Protein coding
Short Description: evolutionarily conserved C-terminal region 5
Computational Description: evolutionarily conserved C-terminal region 5 (ECT5); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.4); Has 1288 Blast hits to 1234 proteins in 189 species: Archae - 0; Bacteria - 12; Metazoa - 605; Fungi - 140; Plants - 385; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
Link: InterPro Scan - TAIR