F13335

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13335

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13335

Determination of introduced cDNA(s)

  • RAFL05-21-L01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-21-L01 - Resource: pda07480

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-21-L01 - full reading 
    ATTTTGTTTT GCGTTTCTGA ATTTGTGGCC ATTATCTTCT CACACTCTCT 
    TCTCTTAGCT CACAGAGGAA AGAAAAATGG CGAATTCCAT TTCATCAATA 
    TCTCTGCCTC GATGTTTCAT CTTCAACAAT GGTAGTCACA AATCAAGGCC 
    ATGGCCAAGC TCAAGCAGTT TCTTTCTCAA CAAATCATCA AAGCATCATC 
    CTCATCCACT ACTCTCTCTT TCTTCTTCGC CGTCTTCCGT CGTAGAAACT 
    GATAATGACG ACGACAACGA CCTCACTTTC AGTGGTTGCA GAGCGTGTGG 
    GAAAGAAGAG AAAGAGAGTG GGTGTAATGG TGACGGACGG ATTCAAGGTG 
    GCATTGCAAC TGTCCCCGGT TTCGGTTGGT GGCCAATTAA GGCTTACAGG 
    CCTTGTCCCG CGTTTGTTGA GGCCGGAGGT AGATACCGCC GCATAGGGCA 
    GAGCATGGAC GAGGTTGCAT TTGGTCGTGG TGACTCTAAA TCCTCCACTT 
    CTGTAGACAC CAGTGATTCA CTACTACGCC AGACAAAGCC AACAAGTTCT 
    AGCAAAAGTT CAAACAAGTG ATATATAGCC CAGTTTTTCA AGTCCAAGAA 
    GAACTTTTTT TGGAAATGTG TAATGATGAT TGGGCCTAAA CATATTATCG 
    GCCCATTTAT AATTTTACGG CTCAATAGTT AAGAAACCCC AAAAAAAAAA 
    AAAAAAA

    Gene models with high sequence identity

    1. AT5G42070.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G42070.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR