F13401

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13401

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Original: F13401

Determination of introduced cDNA(s)

  • RAFL06-70-B19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-70-B19 - Resource: pda03336

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-70-B19 - full reading
    AAGAAGATAA CAATTACTAC AACTGTGCGC TCTTGTTATC TCTGCTTTGA 
    AGTGAAATCA GCTTTGGCTA TGGCTTCTTC GACAGCTTTG TCTCTCTCAT
    GGAGCTCCTC TCCTTGTTGG TCACACAGCT TCAATGGCGG TGCAAATGAA
    ACCCTAAAAG TATCTGAGCG AAGGTTCAAT TTTGAAGTTG TTTCCCAGAA
    GAAAGCTAAG AAACTTCGCA AGGTAATTTT GAAAGAGGAT GTGACGGATT
    TGGGTAAGCA AGGGCAATTA CTTGATGTGA AAGCTGGATT TTTCAAAACT
    TCCTCTTGCC TACTGGAAAG GCTCAGCTTA TGACTCCACT TCTGCTCAAG
    GAATTGAAGA TGGAAGACGA ACGGATTGAG GCAGAGAAGC AAAGGGTGAA
    AGAAGAGGCA CAACAACTGG CGATGGTATT CCAAACCGTT GGTGCTTTCA
    AGGTTAAACG CAAAGGCGGT AAAGGCAAAC TGATATTTGG ATCTGTCACA
    GCTCAAGACC TCGTCGACAT CATCAAATCA CAGCTCCAAA AGGACATCGA
    CAAACGCCTT GTCTCTCTCC CAGAAATCCG TGAAACCGGA GAATACATAG
    CCGAACTCAA GCTTCACCCC GATGTCACTG CTCGAGTTAA GATCAATGTT
    TTCGCTAACT AAACCTTCAA CGATTCAAGA CTCCTACTGC ATCCCAAGGA
    ACGTATAGAG AGGGAAAAGA GAGTAGCCTC TTGTGGTGAG GATTGAAGGT
    TGTGAAGTTT TTCCTTTAGA TTGTTTGATG CATTTGTATT TTTGCTATTT
    TTGGAATCTG GAAACGCTAA AAGTATAATA TTCTCTTGCA AGTTATGATA
    TTTACTTGAA GTTAAAAAAA AAAAAAAAAA AAAATAAAAA AAAAAAAAAA
    A

    Gene models with high sequence identity

    1. AT3G44890.1 [+] show detail - ribosomal protein L9
      E-value: 0; Score: 99.88

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMTigr Ribosomal protein L9, bacteria/chloroplast 6.6e-19
    HMMPanther 50S RIBOSOMAL PROTEIN L9 2.5e-52
    HMMPanther Ribosomal protein L9 2.5e-52
    HMMPanther 50S RIBOSOMAL PROTEIN L9 1.9e-43
    HMMPanther Ribosomal protein L9 1.9e-43
    HMMPfam Ribosomal protein L9, N-terminal 0.000000016
    HMMPfam Ribosomal protein L9, C-terminal 5.3e-22
    Gene3D Ribosomal protein L9, C-terminal 0.0000000000000034
    superfamily Ribosomal protein L9, C-terminal 4.6e-21

    See the detailed result >

    AT3G44890.1

    Model type
    Protein coding
    Short Description
    ribosomal protein L9
    Curator Summary
    Plastid ribosomal protein CL9
    Computational Description
    ribosomal protein L9 (RPL9); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, plastid large ribosomal subunit, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9 (InterPro:IPR000244), Ribosomal protein L9, bacteria/chloroplast (InterPro:IPR020594), Ribosomal protein L9/RNase H1, N-terminal (InterPro:IPR009027), Ribosomal protein L9, N-terminal (InterPro:IPR020070), Ribosomal protein L9, C-terminal (InterPro:IPR020069); Has 7269 Blast hits to 7269 proteins in 2533 species: Archae - 0; Bacteria - 5393; Metazoa - 2; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 1796 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR