F13417

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13417

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13417

Determination of introduced cDNA(s)

  • RAFL09-79-N20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-79-N20 - Resource: pda08826

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-79-N20 - full reading 
    AGGAAAGACT CCGTGGCTCG ATCCTAGTCT TGGCGATCGC CTCTACCCTT 
    TTTGACTCTA TTCTTCTTCT TCTTCATTCA TTTCCCCTCT TATTCATTGC 
    CTTTAGGGTT TCTTACACGA TATGAGCTAA ATACGATTTT GATTTCACCC 
    TAAGCTTTCT TCTATTGCTT CTCGTCGTTG CAGGGTTTTC TTAAATGGAA 
    ACGCCCGGCG CCAGTCATGA TTCATTTAGG GGTTCTCCTC GTAGAAACTC 
    CATCCTCTCT GCTTCTAACA TCATCCAGGC CCCTATTTCT ACCTTGTTAG 
    AGTATTCGGG TCTCTTTCGA GCTAGGCCAA GTCCTAGTCA TGAGGCTGAG 
    ACGCTTGTTA GTGATGATTC TTCAGGACTC TCCAATGGGG AGGTTGCCAT 
    TAGGATCATT GGCAACACCG AGCAGGATGC TGAAACTGAT ACCAATGCTC 
    TGAGGGAACC CGGACACTCT GAACTCTTGG GTTCTTCTGC TACTCAGGTT 
    GATCCCATGG GAGGTGCTTC AGAAGGTGCC TCTCAGGCTG CTCCAGGTGA 
    TCCTGCTGCT GGAGACGCCG CTTCCCGGGA TTCGCCTTAC CAAAGATATG 
    ATATTCAGCA GGCTGCACGC TGGATTGAGC AAATTCTTCC CTTTTCTTTG 
    CTTCTGTTGG TTGTTTTTAT CCGCCAGCAT TTGCAGGGGT TCTTTGTCGC 
    CATTTGGATT GCTGCTGTCA TGTTCAAGTC AAATGATATT CTCAAGAAGC 
    AAACAGCTTT GAAGGGTGAG AGGCATATCT CGGCATTAAT TGGAATCTCT 
    GTAGCATTTA CGGCCCATGT TGTTGGTGTT TATTGGTGGT TTCGGAAGGA 
    TGACCTCTTG TATCCCTTAA TCATGCTGCC TCCAAAGTCC ATACCACCTT 
    TCTGGCATGC CATTTTTATC ATAGTGGTGA ATGATACACT TGTCCGGCAG 
    GCCTCAATGA TTTTCAAGTG TTTTTTGTTG ATGTACTACA AAAACAGTAG 
    GGGTCGGAAT TATCGTAAAC AGGGTCAATT GCTAACTTTG GTTGAATATT 
    TCATGCTTCT GTATCGCTCT TTACTGCCTA CCCCTGTATG GTACCGTTTC 
    TTTTTGAACA AGGATTATGG AAGCCTCTTC TCCTCTCTTA TGACGGGATT 
    GTATCTTACA TTCAAGCTCA CTTCAGTAGT TGAGAAGGTT CAATCCTTCT 
    TTACGGCATT GAAGGCTTTG TCACGTAAAG AGGTGCACTA CGGATCATAT 
    GCAACTACAG AGCAGGTAAA TGCAGCAGGC GACCTGTGTG CCATCTGCCA 
    GGAGAAGATG CACACCCCAA TTCTTCTTCG CTGCAAACAC ATGTTTTGCG 
    AAGATTGCGT TTCAGAGTGG TTTGAGAGAG AGAGGACGTG TCCTTTGTGC 
    AGGGCCTTGG TCAAACCAGC AGATCTGAAA TCATTCGGTG ATGGATCCAC 
    CAGCCTCTTC TTCCAGATTT TCTGATTAAA ACACATATAC AAGACTGCAA 
    AGTAAAAAAG ACCCTCTAGA CTCACTTGCT CACTCGATAG TTTTCTTAGA 
    GAGTATTTCT ATACAATGCC ATTCAAGCTG TGAAAGAAAC CACTGATGCC 
    TTGGAAGATG TTCATACTAT GTCATTTGTT AATATGAATG AAATCGCCTT 
    TTAT

    Gene models with high sequence identity

    1. AT5G01960.1 [+] show detail - RING/U-box superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, C3HC4 RING-type 0.00067
    ProfileScan Zinc finger, RING-type 0
    superfamily SSF57850 5.8e-17
    HMMPanther PTHR15860 0
    PatternScan Zinc finger, RING-type, conserved site 0
    HMMSmart Zinc finger, RING-type 1.19999985703101e-07
    Gene3D Znf_RING/FYVE/PHD 1.80000149287192e-11

    See the detailed result >

    AT5G01960.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G65040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR