F13426

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13426

Determination of introduced cDNA(s)

RAFL09-48-L24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-48-L24 - Resource: pda06403

full reading [+] show sequence

AAAAGACTAT CAAAAGAAGA AACAGAGCAA ATTTCATTCT CTCAGAACAA 
ATATATACAT ATTAATCAGA ATCAGGAAAA GTGAAGAAGC GAAAGAGAGA 
AGAAGATCGG ATGGGAGTGG ATTACTACAA AGTCCTCCAA GTCGATCGCA 
GCGCAAGCGA CGATGATCTC AAGAAAGCTT ATCGTAAACT TGCCATGAAA 
TGGCATCCCG ACAAAAATCC CAACAACAAA AAGGATGCCG AAGCTATGTT 
CAAACAAATA TCCGAAGCTT ACGAGGTACT AAGTGATCCT CAGAAGAAAG 
CTGTGTATGA TCAATATGGT GAGGAAGGTT TGAAAGGGAA CGTGCCACCT 
CCGGATGCAG GTGGAGCTAC TTACTTCTCT ACCGGGGATG GTCCAACGTC 
CTTCAGGTTC AACCCGAGAA ATGCGGATGA TATATTTGCT GAGTTCTTTG 
GCTTCTCTAG CCCATTTGGC GGCGGAAGAG GTGGTACAAG ATTCTCTAGC 
AGCATGTTTG GTGATAATAT GTTTGCTTCT TTCGGCGAAG GAGGAGGCGG 
TGGTGGTGGC TCGATGCATC ACGGTGGAGC TAGGAAGGCT GCTCCTATCG 
AAAACAAGTT GCCTTGTAGC CTTGAAGATC TTTACAAAGG AACCACCAAA 
AAGATGAGGA TTTCTAGGGA GATTGCTGAT GTCAGTGGCA AGACGATGCA 
GGTGGAAGAG ATTTTGACCA TTGATGTGAA ACCAGGATGG AAGAAAGGCA 
CAAAGATCAC GTTCCCAGAG AAAGGCAATG AGCAACCCGG TGTGATTCCA 
GCGGATTTAG TCTTCATAAT CGACGAGAAG CCTCACCCGG TTTTCACTCG 
AGAGGGTAAC GACCTCATAG TCACACAGAA GATCTCACTT GTTGAGGCCT 
TGACTGGTTA CACAGTGAAC CTGACTACTC TTGATGGTCG GAGACTGACA 
ATTCCAGTCA CCAACGTGGT CCATCCCGAG TACGAGGAAG TGGTACCGAA 
GGAAGGGATG CCATTGCAAA AAGACCAGAC TAAGAGAGGT AACTTGAGGA 
TCAAATTTAA CATCAAGTTC CCTACAAGGT TAACCTCAGA GCAGAAGACA 
GGAGTGAAGA AACTTCTCGG ATGAAATGAG TTATAGTCAG CACATTTCAG 
ACAAAACAAT GTTGAACAGA AGAGGAACAA GAAAATCATG TTGCAGACCA 
CAGGGATTGT GATTAAATAC TGTTGTGACC TTTTTGATCG ATTTGTAACA 
TATGTACGAT TGGATACCTC CTAATAAATT TGTTACTTTC TCTAC

Gene models with high sequence identity

AT2G20560.1 [+] show detail - DNAJ heat shock family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	Heat shock protein DnaJ, N-terminal	1e-27
Gene3D	no description	1.6e-25
Gene3D	no description	1.5e-25
ProfileScan	Heat shock protein DnaJ, N-terminal	24.541
HMMPanther	HSP40-RELATED	6.9e-189
HMMPanther	Molecular chaperone, heat shock protein, Hsp40, DnaJ	6.9e-189
PatternScan	Heat shock protein DnaJ, conserved site	0
HMMSmart	Heat shock protein DnaJ, N-terminal	4.4e-33
superfamily	Heat shock protein DnaJ, N-terminal	3.2e-33
superfamily	HSP40/DnaJ peptide-binding	6.4e-22
superfamily	HSP40/DnaJ peptide-binding	8.2e-17
HMMPfam	Chaperone DnaJ, C-terminal	4.4e-30
HMMPfam	Heat shock protein DnaJ, N-terminal	5.9e-28

See the detailed result >

AT2G20560.1

Model type: Protein coding
Short Description: DNAJ heat shock family protein
Computational Description: DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT4G28480.1); Has 27936 Blast hits to 27733 proteins in 3449 species: Archae - 187; Bacteria - 10270; Metazoa - 4781; Fungi - 2609; Plants - 2869; Viruses - 17; Other Eukaryotes - 7203 (source: NCBI BLink).
Link: InterPro Scan - TAIR