F13435

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13435

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Seed::deep brown
Seed::light green

Original: F13435

Determination of introduced cDNA(s)

RAFL06-10-C17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-10-C17 - Resource: pda02973

full reading [+] show sequence

AATCTCGATC TCGAGAAAGA AAGAAAAAAA GAGAAGGCAT GGCCGCGGAA 
GAAGCGACGG AGTTCTACCT GAGATACTAT GTCGGTCACA AAGGGAAATT 
TGGACACGAG TTCCTGGAGT TCGAGTTTAG AGAGGACGGT AAGCTCCGTT 
ACGCCAATAA CTCTAACTAC AAGAACGATA CTATTATCCG CAAGGAGGTA 
TTTCTCACCC CCGCCGTGCT CAAGGAATGC AAGCGTATCG TCTCCGAGAG 
CGAGATTCTG AAAGAAGACG ATAACAATTG GCCGGAACCT GACCGTGTTG 
GAAAGCAAGA GCTCGAGATC GTCTTGGGTA ATGAGCATAT CTCATTCGCT 
ACATCTAAGA TTGGATCTCT TGTTGATTGC CAGAGCAGTA ATGATCCTGA 
AGGACTTCGC ATCTTCTACT ATCTTGTTCA GGACTTGAAA TGTCTTGTTT 
TTTCGCTCAT CTCTCTGCAC TTCAAAATCA AGCCTATCTA GAGAAGAAAA 
TCAGTTTGTG ACATGTCAAG ACGCGATGAA TTTGTTGGGA ACATGAGGAC 
TTTGTGACTG AAGTTTGGTT GTTTTTATGT CTCTGGTTCT CTGTTTTTTT 
TTTTTGTTGG ATTTGGGTGA AAGTGGGTAT GTAAGATGTT CTACCTCAAC 
TTTTAGTCCT TTTTTGTGTC AACATCCCAT GTGAAGAACC TTTCATGAAC 
CACAACCTAT CTTCTAAAAA CCATATACTT GCTGTTTTCT TAC

Gene models with high sequence identity

AT1G02140.1 [+] show detail - mago nashi family protein
E-value: 0; Score: 99.87

InterPro Scan Digest

Program	Description	E-value
superfamily	Mago nashi protein	2.5e-78
HMMPfam	Mago nashi protein	1e-88
HMMPanther	Mago nashi protein	6e-109

See the detailed result >

AT1G02140.1

Model type: Protein coding
Short Description: mago nashi family protein
Computational Description: MAGO NASHI (MAGO); FUNCTIONS IN: protein binding; INVOLVED IN: pollen tube guidance, sex determination, embryo development ending in seed dormancy; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mago nashi protein (InterPro:IPR004023); Has 476 Blast hits to 476 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 223; Fungi - 96; Plants - 76; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Link: InterPro Scan - TAIR