F13443

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13443

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13443

Determination of introduced cDNA(s)

  • RAFL06-69-O22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-69-O22 - Resource: pda17218

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-69-O22 - full reading 
    CCCCGGTCTC CTCTCCACCA AGTGAATCTC TTTCTCTCTC TCTTTTTCTC 
    CGCGGAAGGA ATCTCTTCTT CTGGTTGCGT TTGAGTCCGT ACGAAAACAA 
    AAGAAAAGAG AGAGATGGCG GAAGAGAAGA AAGCTCCAAT CAGTGTCTGG 
    ACTACCGTGA AGCCCTTCGT CAATGGCGGT GCCTCTGGTA TGCTCGCTAC 
    TTGCGTTATC CAGCCGATCG ACATGATTAA GGTGAGGATT CAACTTGGTC 
    AGGGATCTGC AGCCAGTATA ACCACCAACA TGCTTAAGAA TGAGGGCGTT 
    GGTGCCTTCT ACAAGGGATT ATCTGCTGGG TTGCTGAGGC AAGCAACTTA 
    CACGACAGCC CGTCTTGGAT CATTCAAGTT GCTGACTGCA AAGGCAATTG 
    AGTCTAATGA TGGAAAGCCT CTACCGCTGT ATCAGAAGGC ACTATGTGGT 
    CTGACAGCTG GTGCTATTGG TGCTTGCGTC GGTAGTCCAG CCGATCTAGC 
    ACTTATCAGA ATGCAGGCCG ATAATACTTT GCCGCTAGCT CAGCGCAGGA 
    ATTATACCAA TGCTTTCCAT GCGCTTACCC GTATTAGCGC TGATGAGGGA 
    GTTTTAGCAC TTTGGAAAGG GTGTGGGCCC ACTGTGGTCA GAGCTATGGC 
    TTTGAACATG GGAATGCTTG CATCTTATGA TCAAAGTGCT GAATACATGA 
    GAGATAATCT TGGTTTCGGG GAGATGTCTA CGGTCGTAGG AGCAAGTGCT 
    GTTTCTGGGT TCTGCGCTGC GGCTTGCAGT CTGCCATTTG ACTTTGTCAA 
    AACTCAGATT CAGAAAATGC AACCGGATGC TCAAGGAAAG TATCCATACA 
    CAGGTTCGCT CGATTGTGCG ATGAAAACCT TAAAAGAAGG AGGACCTCTG 
    AAATTTTACT CGGGTTTCCC AGTTTACTGT GTCAGGATTG CCCCTCACGT 
    CATGATGACA TGGATCTTCC TAAACCAGAT TACGAAATTT CAAAAGAAGA 
    TTGGTATGTG AGGAACAAAT ACAGCAGCAA AAAAATAAGA TGAGAAGAAC 
    GAAAACACAA TTGGAATTGT GTTCATTTGC TTTTTAATCA TATACATAAC 
    CTGCCTTAAA AGCATATTAT TGTAGCTGTT TGAACTTTAA TTTTTTGCTA 
    AAAAAAAAA

    Gene models with high sequence identity

    1. AT5G19760.1 [+] show detail - Mitochondrial substrate carrier family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Mitochondrial substrate/solute carrier 8.9e-15
    HMMPfam Mitochondrial substrate/solute carrier 1.1e-19
    HMMPfam Mitochondrial substrate/solute carrier 6.5e-18
    FPrintScan Mitochondrial carrier protein 0.0001
    FPrintScan Mitochondrial carrier protein 0.0001
    FPrintScan Mitochondrial carrier protein 0.0001
    FPrintScan Mitochondrial carrier protein 0.0001
    HMMPanther MITOCHONDRIAL 2-OXOGLUTARATE/MALATE CARRIER P 1.8e-163
    HMMPanther Mitochondrial substrate carrier 1.8e-163
    superfamily Mitochondrial substrate carrier 1.2e-69
    ProfileScan Mitochondrial substrate/solute carrier 19.574
    ProfileScan Mitochondrial substrate/solute carrier 23.607
    ProfileScan Mitochondrial substrate/solute carrier 17.643

    See the detailed result >

    AT5G19760.1

    Model type
    Protein coding
    Short Description
    Mitochondrial substrate carrier family protein
    Computational Description
    Mitochondrial substrate carrier family protein; FUNCTIONS IN: oxidative phosphorylation uncoupler activity, binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: in 6 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: dicarboxylate carrier 2 (TAIR:AT4G24570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR