F13507

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13507

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13507

Determination of introduced cDNA(s)

  • RAFL09-07-F06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-07-F06 - Resource: pda05160

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-07-F06 - full reading 
    ACGTTAAGCT CTCTCACCTA CCCGAAAGCT GCGAACTTTT CCTAGAAAGC 
    TAATTCAAAC GTAGAATATT CTAATCCCAC CACTTAATTT TATAAATGCG 
    GAATTCGCGA TTTCGTGGAA TCAATTCTGG CTCTTTCCAG AATAAACGGT 
    GGTGGTCACT AGTGTTGGAT TCTCTCTTAT CGTTTTTCGT TAGACTATCA 
    GAAATTATCA AGAGATTCTT TCATAAATTT GTATCGATGG GTTTGGGAAA 
    CATTTATAGA AGACGAATGA AAGTCTTCTC TATAGCTATA CTTATTTACC 
    TCGATTATAA GGGTGTTCAG CAAAAGGAGA AGTGGATTAA GAAGTCTAAA 
    GTTCCTGCTT TATGGGATAA AGCTCATGAT CGTAATGCTA AGCGGGTTTT 
    GAATTTGATT GTGGAATTGG AAGGGTTATG GGTGAAACTT GGGCAGTATC 
    TATCTACTCG TGCTGATGTT TTACCTCAGG CTTATATATC TCTTCTCACT 
    CAGTTGCAAG ACTCGCTACC TCCTCGTCCG TTGCAGGAGG TTTGTCGAAC 
    TATTGAAAGA GAACTAGGGA ATTCCATGGA TGTTTTGTTC ACCGATTTTG 
    TTGACGAGCC TTTGGCAACT GCTTCGATAG CTCAGGTTCA TCGTGCAACT 
    CTAGCTAACG GGCAGGATGT GGTTGTTAAA GTTCAGCATG ATGGCATTAG 
    AGCGATTATT TTGGAGGACT TAAAGAATGC AAAGTCCATT GTTGACTGGA 
    TTGCGTGGGC GGAACCACAG TACAATTTTA ATCCCATGAT AGATGAATGG 
    TGCAAGGAAG CTCCAAGAGA ACTAGACTTC AATATTGAAG CTGAAAATAC 
    TAGAACAGTA TCCGGGAATC TCGGGTGCAA GAAGACAAAT GATGAAGTTA 
    GAAGTGCCAA TCGGGTTGAT GTCTTGATTC CAGATATTAT TCAGTCGTCT 
    GAGAGTGTAC TCATTCTGGA GTACATGGAT GGAGTACGTT TGAATGATGT 
    GGAATCTCTA GATGCTTTTG GTGTGGATAA ACAAAAGATC GTTGAAGAGA 
    TCACTCGTGC ATATGCCCAT CAGATATTTG TTGATGGGTT TTTTAATGGC 
    GACCCTCATC CAGGAAATTT TCTTGTTAGT AAGGAACCAC AACATCGTCC 
    AATTTTACTT GATTTCGGGC TTTCAAAGAA AATCTCACAC TCCTTGAAAC 
    AAGCACTAGC CAAGATGTTT CTAGCATCGG CAGAGGGAGA TCAAGTGGCG 
    CTTTTGTCTG CCTTTGCAGA AATGGGACTG AAGCTGCGGC TAGACATGCC 
    AGATCAAGCA ATGAGTGTGG CAGGTCTCTT CTTTCGATCT TCAACTCCAT 
    CAAGCGAGGC TATGAAAACG TTTAAAACCC TGAACGATCA AAGAGTGCAA 
    AATATGAAAG TTATACAGGA GAAGATGCAG CTCAACCAGA AAGAAGTTAA 
    ACGCTTCAAT CCGATAGATG CATTTCCTGG TGATATTGTT ATTTTTGCGA 
    GGGTCATTAA TTTACTCAGA GGACTTTCAT CTACTATGAA TGTTCGGATT 
    GTTTATCTGG ACATCATGAG ACCATTTGCC GAATCTGTTC TGTTAGGGAG 
    TATTAGTCGA GGACCAACTG TGGATGCTCA TTGGATACAT GACTCGCCAA 
    TCCATTCTGA TGTAGAGTCC AAAGTGAGGA AGCTGCTCGC TGAACTTGGG 
    AGTATCCAGA AAATACTTGG AATTCAGGTG TGTGCATATA AAGATGGGAA 
    AGTCATAATT GACACTGCTG CTGGAGTGCT TGGAAGATAT GACCCTCGTC 
    CAGTTCAACC CGATAGTTTA TTTCCTGTTT TCTCTGTGAC AAAGGGTGTC 
    ACTGCTGGAA TGATACATTG GCTTGTTGAC AAAAGGAAAC TCCAGCTCGA 
    CCAGACTGTG GCAAATATGT GGCCAGGGTT CGGATCAAAT GGAAAAGATA 
    CCATAAAGGT CCATCATGTG CTTAACCATA CATCTGGGAT GCAAAATTCC 
    TTTGACCCTG TAGGAGAAAA TCCTCTGCTT ATTTGTGACT GGGATGAATG 
    TTTGAAACGG ATTGCTAATT CATCACCTGA AACAGAGCCT GGCAGTCAGC 
    AGTCCTATCA CTATCTCACG TTTGGATGGC TATGTGGTGG AATCCTCGAG 
    TATGCTTCTG GAAAGAAACT CCAGGAGATC CTTGAAGAGT CCATTGTTAA 
    ACCCCTAAAT ATTGATGGAG AACTGTACAT TGGAATCCCC CCAGGTGTTG 
    AATCTAGGCT TGCCACATTG ACGTTCGACA CTGATGAAAT GAGCAAGCTT 
    TCGTCCATTG CCAGCCAACC TGAGCTTCCT TCCACATTTC AGCCTGACAA 
    GATCATACAA ATGGCAACCA ACTTGCCAGT CTTATTTAAC ACATTGAATG 
    TGCGCAGAGC CATAATCCCT GCGGCTAATG GACATTGCTC TGCTCGTGCA 
    CTTGCAAGGT ACTATGCAAC CCTAGCAGAT GGTGGCCTAG TGCCACCTCC 
    ACATTCCTCT TTATCCCAGC CACCACTAGG TAGCCACACC CATGTTCCGA 
    AATTCACGTC GTTGAAAGAC ACAACAAAAA AGAAAAAGGG TAAGGAGATG 
    GCAGCTACAG AAAAGGGTAA ATCAAAAGAT CATCAAGAGA GGAAGCTTTA 
    TGATGAGAAA CAGTTTATGA GTGCTAGTAG CAGCAGAGAG TCAAATACAG 
    AAAGTTTAGC CAGGCTAGTT GATACTAACA GTTCTGCTGG CAAAACTGAG 
    ATCAATAGCG ATGATCATCA ACATGATATT CATAATATGT TTAGCAACCC 
    GAGGATCCAT GATGCTTTCA TGGGTGCTGG AGACTACAGT GGCTTAGTAG 
    TGCCTGATGG AAAGTTTGGG CTTGGTTTTA AGCGCGCCAT TTCTCAAGAT 
    GGGTCTCTGG TTGGCTTTGG ACATTCAGGG TTAGGAGGAT CAACAGGCTT 
    CTGTGACATC AACAACAGAT TTTCCATTGC AGTAACACTG AACAAGATGT 
    CTATGGGAGG TGTAACGGCT AATATTGTGA AGCTTGTTTG CTCGGAATTA 
    AATATCCCAT TGCCTAAGGA CTTCGCAACT GATATAGGTG CAGATTCGCA 
    GATGGGTACG CCTCTAATCA ACTGAGGTTG GTTTTCGACG TAAGTTTTGT 
    CTGCTCATGT TACAACATGC ATAGCTGTCG CCTTAAATAG CTAATAGAAA 
    TTGCTGGAAA GTAAAGTGTA ATGGATCAGT GTTTTTGTTT GTTTGTCTGT 
    ATACTTACTT AAGCGAACAC ATTTAAGCAA TTTCCTTGGA GAATGTAATT 
    TATTGGCCTA TACATGCTTC AGTTTCCAGA TT

    Gene models with high sequence identity

    1. AT5G24810.1 [+] show detail - ABC1 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Beta-lactamase-related 3.09999999999998e-42
    superfamily Beta-lactamase-type transpeptidase fold 5e-61
    HMMPanther PTHR10566:SF7 0
    superfamily Protein kinase-like domain 7.5e-13
    HMMPfam ABC-1 5.30000000000001e-24
    HMMPanther PTHR10566 0
    HMMPfam WaaY 0.016
    Gene3D G3DSA:3.40.710.10 2.69998997787803e-53

    See the detailed result >

    AT5G24810.1

    Model type
    Protein coding
    Short Description
    ABC1 family protein
    Computational Description
    ABC1 family protein; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Beta-lactamase-type transpeptidase fold (InterPro:IPR012338), Beta-lactamase-related (InterPro:IPR001466), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC2 homolog 13 (TAIR:AT5G64940.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR