F13547

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13547

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13547

Determination of introduced cDNA(s)

  • RAFL07-11-E17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-11-E17 - Resource: pda01462

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-11-E17 - full reading 
    ACTTTCAAAG AAGAGAGAGA GAAAGAAAGA TGGAGAAGAA CATGAAGTTT 
    CCAGTAGTAG ACTTGTCCAA GCTCAATGGG GAAGAGAGAG ACCAAACCAT 
    GGCTCTAATC AATGAAGCTT GTGAGAATTG GGGCTTCTTT GAGATAGTGA 
    ACCATGGATT ACCACATGAC TTAATGGACA AGATCGAGAA GATGACAAAG 
    GACCATTACA AGACATGCCA AGAACAAAAG TTCAATGACA TGCTCAAGTC 
    CAAAGGTTTG GATAATCTTG AGACAGAAGT CGAAGATGTC GATTGGGAAA 
    GCACTTTCTA CGTTCGTCAC CTCCCTCAAT CCAATCTCAA TGACATTTCA 
    GATGTGTCTG ATGAATACAG GACGGCCATG AAAGACTTTG GTAAGAGACT 
    GGAGAATCTT GCTGAGGATT TGTTGGATCT ACTGTGTGAG AATCTAGGGT 
    TAGAGAAAGG GTATTTGAAG AAAGTGTTTC ATGGAACAAA AGGCCCAACC 
    TTTGGGACAA AGGTGAGCAA TTATCCACCA TGTCCTAAAC CAGAGATGAT 
    CAAAGGTCTT AGGGCCCACA CTGATGCAGG AGGCATCATC TTGTTGTTTC 
    AAGACGACAA GGTCAGTGGT CTCCAGCTTC TTAAAGATGG TGACTGGATT 
    GATGTTCCTC CTCTCAACCA CTCTATTGTC ATCAATCTTG GTGACCAACT 
    TGAGGTGATA ACCAACGGGA AGTATAAGAG TGTGCTGCAC CGTGTGGTGA 
    CTCAACAAGA AGGAAACAGG ATGTCGGTTG CATCGTTTTA CAACCCGGGA 
    AGCGATGCGG AGATCTCACC AGCTACTTCG CTTGTCGAGA AAGATTCCGA 
    GTACCCGAGT TTCGTCTTTG ATGACTACAT GAAGCTTTAT GCAGGGGTCA 
    AGTTTCAGCC CAAGGAGCCA CGGTTCGCAG CAATGAAGAA TGCTTCTGCA 
    GTTACAGAAC TGAATCCTAC AGCAGCCGTA GAGACTTTCT AAAAATGGAT 
    TTGAGATTCA AGTGAAGCAG AGAAAGAAAG ATGAGTTTGT GTTGTGTGTT 
    ATGGCAATAA GTTAAAACTT GTATTAGTGT TGATTAATTG TTGGTCAATT 
    GGTGTGTTTT AAAGTGTGGG GTGTTTATGT TTATGGAAGA TGATAATAAT 
    TATAAAAATC TAAATTCTAG GAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT1G62380.1 [+] show detail - ACC oxidase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.3e-91
    HMMPfam Oxoglutarate/iron-dependent oxygenase 3.3e-24
    superfamily Clavaminate synthase-like 3.1e-88
    HMMPanther 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 3.1e-211
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 3.1e-211

    See the detailed result >

    AT1G62380.1

    Model type
    Protein coding
    Short Description
    ACC oxidase 2
    Curator Summary
    Encodes a protein similar to 1-aminocyclopropane-1-carboxylic oxidase (ACC oxidase). Expression of the AtACO2 transcripts is affected by ethylene.
    Computational Description
    ACC oxidase 2 (ACO2); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity, copper ion binding; INVOLVED IN: response to salt stress, detection of ethylene stimulus, ethylene biosynthetic process; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G12010.1); Has 8564 Blast hits to 8520 proteins in 992 species: Archae - 0; Bacteria - 1100; Metazoa - 104; Fungi - 1037; Plants - 4951; Viruses - 0; Other Eukaryotes - 1372 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR