F13602

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13602

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13602

Determination of introduced cDNA(s)

  • RAFL09-20-F20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-20-F20 - Resource: pda05576

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-20-F20 - full reading 
    AAAACCCAAA CACATAAAAA AATGAGTCAA CACAACATCT TAGAAGCTCT 
    AAATGTCCGG GTCGTGGGTA CGGGTGATCG GATCCTGTTT TTGGCCCATG 
    GATTCGGTAC TGACCAATCA GCTTGGCACT TGATCCTTCC TTACTTCACT 
    CAAAACTACA GAGTCGTCCT CTATGACCTA GTTTGCGCCG GCAGTGTCAA 
    CCCCGATTAC TTCGATTTCA ATCGTTACAC AACTCTCGAT CCTTACGTCG 
    ATGATCTTCT CAACATCGTT GATTCACTCG GAATCCAAAA CTGTGCTTAC 
    GTTGGTCACT CTGTTTCCGC TATGATCGGA ATCATCGCTT CGATTCGTCG 
    GCCGGAGCTT TTCTCCAAGC TTATCTTGAT CGGATTTTCG CCTAGGTTTC 
    TCAACGACGA GGATTATCAT GGAGGATTCG AAGAAGGTGA GATTGAGAAA 
    GTTTTCTCAG CTATGGAAGC TAATTACGAA GCTTGGGTTC ATGGATTTGC 
    TCCGCTTGCT GTTGGAGCTG ATGTTCCGGC GGCGGTTAGA GAATTTAGCC 
    GGACTTTGTT TAATATGCGT CCGGATATAT CTCTGTTTGT TTCGAGGACG 
    GTTTTCAACA GCGATCTGAG AGGTGTGCTT GGGTTAGTTA GAGTTCCGAC 
    GTGTGTGATT CAGACGGCGA AGGATGTTTC TGTGCCGGCT TCGGTGGCGG 
    AGTATCTTAG GTCTCATCTC GGTGGAGATA CTACTGTGGA GACTCTTAAA 
    ACTGAAGGAC ATTTGCCGCA GCTTAGTGCT CCGGCGCAGC TTGCTCAGTT 
    TCTCCGGCGA GCTCTTCCTC GGTGACTTTT TTTTATAGAT ATAAAAAGAG 
    AACAATAAAA TATAATTGGT GGAATATGGG TTTAGTGGGG TCCACGTATC 
    GAAGAAAAGA AGGGCCTCTA TTTGTGGAGG ACAGTTTGGC ATTGTCACAA 
    ATCTAGTAAG ATAAGATTGT TCACTTGACA CGTGACTTTC GCTTTTTTAT 
    CACTTTTTTT CTTGCTCTCT TCATTAGTTT ATAATCACAA GTTTATTTCA 
    TAAAATAATT GGAGAATAAC C

    Gene models with high sequence identity

    1. AT3G03990.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3e-38
    superfamily alpha/beta-Hydrolases 9.9e-42
    HMMPfam Alpha/beta hydrolase fold-1 4.7e-09
    HMMPanther SIGMA FACTOR SIGB REGULATION PROTEIN RSBQ 2.7e-154
    HMMPanther ALPHA/BETA HYDROLASE RELATED 2.7e-154

    See the detailed result >

    AT3G03990.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G37470.1); Has 7052 Blast hits to 7050 proteins in 1427 species: Archae - 69; Bacteria - 5615; Metazoa - 94; Fungi - 57; Plants - 279; Viruses - 0; Other Eukaryotes - 938 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR