F13622

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13622

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
whole plant flowering stage (PO:0007016)
  • late (PATO:0000693)
    (Adult plant::Flowering::late)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13622

Determination of introduced cDNA(s)

  • RAFL04-17-F01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-17-F01 - Resource: pdz87408

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL04-17-F01 - 5 prime EST 
    GAAATATGCA AACTAGAAAA CAATCATCAG GAATAAAGGG TTTGATTACT 
    TCTATTGGAA AGAAAAAAAT CTTTGGAAAA TGGATCAAAC AGAGGAACCA 
    CCACTCAACA NACACCAGCA GCACCCAGAA GAAGTTGAAC ATCATGAGAA 
    TGGTGCGACT AAGATGTTTA GGAAAGTAAA GGCTAGAGCT AAGAAGTTCA 
    AGAACAGTCT CACTAAACAT GGACAAAGCA ATGAGCATGA GCAAGATCAT 
    GATTTGGTTG AAGAAGATGA TGATGATGAC GAGCTAGAAC CTGNAGTGAT 
    CGATGCACCA GGCGTAACAG GTAAACCTAG AGAAACTAAT GTTCCAGCAT 
    CGGAGGAAAT TATTNCACCA GGGACAAAGG TGTTT

    Gene models with high sequence identity

    1. AT5G52310.1 [+] show detail - low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
      E-value: 0; Score: 99.22

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL04-17-F01 - 3 prime EST 
    AATCCAAAGC CGAACAATTT ATTAACCAAA TGTCCTTTTT TCACACAAAC 
    AAGGAATTAT ACCATAATAC ATCAAAGACG TCAAACAAAA CACACATAAA 
    CATCCAAAGT GAAACTTGAA AATCTCAGTT CTCATATTCT TAAAGCTCCT 
    TCTGCACCGG AACAACAGTG GAGCCAAGTG ATTGTGGAGA CTCTTCAACG 
    GAATGAGGCG ATTTTGGCTT CACCTCCTCC GTCGCACCAC CACCAAACCA 
    GCCAGATGAT TTTGGAGCCT CTTCAACAGA ATGTGGCGAT TCTGGCTTCA 
    CCTCATCAGT CGCACCACCA CCGAACCATC CTTTAATCCT CCCAACCATT 
    CCTCCTCCTC CTTTCACTTC CTCTTCCACC GCCTCACCCT CCTCCGATGC 
    TGCCTTCTCG GTAGAGATCT TCTCCACTTC CTTTGTCGTC GTTTCCTTCT 
    TCTCTTCTTC TCCTCCAATC TGAAGTTTCT CGGCAACCAT ATCAGAAAAG 
    GCTTTGTCTT CTTCTTCAGT TG

    Gene models with high sequence identity

    1. AT5G52310.1 [+] show detail - low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
      E-value: 0; Score: 100.00

    AT5G52310.1

    Model type
    Protein coding
    Short Description
    low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
    Curator Summary
    cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression
    Computational Description
    LOW-TEMPERATURE-INDUCED 78 (LTI78); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 7 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT5G52300.2); Has 4951 Blast hits to 3145 proteins in 397 species: Archae - 10; Bacteria - 1464; Metazoa - 1621; Fungi - 447; Plants - 293; Viruses - 46; Other Eukaryotes - 1070 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR