F13623

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13623

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13623

Determination of introduced cDNA(s)

  • RAFL06-72-M13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-72-M13 - Resource: pda03404

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-72-M13 - full reading 
    GACATAAAAT TTGTATAATA GTACGTGGTT GATCGTTTTT GTGTGTTGAA 
    AATCAAAATG GCGTCGAGCG ATGAGCGTCC AGGAGCGTAT CCGGCACGTG 
    ACGGATCAGA GAACTTACCT CCGGGAGATC CAAAGACGAT GAAGACGGTG 
    GTGATGGATA AAGGAGCGGC GATGATGCAA TCGTTGAAAC CGATCAAACA 
    GATGAGTCTC CATTTGTGTT CTTTCGCTTG TTATGGTCAC GATCCTAGCC 
    GTCAGATTGA AGTCAACTTC TATGTTCATC GACTCAACCA AGACTTTCTT 
    CAATGTGCTG TTTACGATTG CGACTCCTCT AAACCCCATC TCATCGGGAT 
    CGAGTATATT GTGTCGGAGA GGTTATTTGA GAGTCTTGAT CCGGAGGAGC 
    AAAAGCTTTG GCACTCTCAT GACTATGAGA TCCAAACAGG CCTTCTAGTA 
    ACTCCAAGGG TCCCTGAGCT TGTAGCTAAG ACAGAGCTTG AAAATATTGC 
    CAAAACTTAT GGGAAGTTTT GGTGCACTTG GCAGACCGAT CGCGGGGATA 
    AATTGCCACT TGGTGCACCA TCACTTATGA TGTCACCACA AGACGTGAAT 
    ATGGGAAAGA TCAAGCCAGG GCTATTGAAG AAACGTGACG ATGAGTATGG 
    AATCTCGACG GAATCTTTGA AGACGTCTCG AGTTGGAATT ATGGGACCGG 
    AGAAGAAAAA TTCGATGGCT GATTATTGGG TTCATCACGG AAAAGGATTA 
    GCGGTTGACA TAATCGAAAC TGAGATGCAG AAATTGGCTC CGTTCCCGTA 
    ATGAAGTTGG TGTGTAACTA ATAATAAAAT GTTGTATATG TCGTCCTATG 
    TTGTCTTATA AGACCATTAG TAAACATAAT TATCCTATAT ATATATACTG 
    TTGTCTGTGT TGAAATATAA CCACCTTCAA CGTAAAAAAA T

    Gene models with high sequence identity

    1. AT5G45690.1 [+] show detail - Protein of unknown function (DUF1264)
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    See the detailed result >

    AT5G45690.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF1264)
    Computational Description
    Protein of unknown function (DUF1264); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1264 (InterPro:IPR010686); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1264) (TAIR:AT4G18920.1); Has 288 Blast hits to 288 proteins in 123 species: Archae - 0; Bacteria - 122; Metazoa - 0; Fungi - 64; Plants - 100; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR