F13629

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13629

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13629

Determination of introduced cDNA(s)

  • RAFL08-10-H13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-10-H13 - Resource: pda04593

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-10-H13 - full reading 
    GCAACACATA ACCCACTCAC AGAAAAACCT AGAAAGCTCT AGAGAGAAAG 
    AGAGAGAGAG ATGGAAGGTA AAGAAGAAGA TGTTAGAGTC GGAGCTAACA 
    AGTTTCCGGA GAGGCAACCG ATCGGAACTT CGGCTCAGAG TGACAAGGAC 
    TACAAAGAGC CACCACCTGC GCCGTTGTTC GAGCCCGGCG AGCTAGCTTC 
    ATGGTCCTTC TGGAGAGCTG GGATTGCTGA GTTTATAGCT ACGTTTTTGT 
    TCCTGTACAT CACTGTTTTG ACTGTTATGG GTGTGAAGAG GTCACCGAAC 
    ATGTGTGCTT CCGTCGGAAT CCAAGGTATC GCTTGGGCTT TCGGTGGTAT 
    GATCTTCGCT CTCGTCTACT GCACCGCTGG TATCTCCGGT GGACACATCA 
    ACCCAGCGGT TACGTTCGGT TTGTTCTTAG CTAGGAAGCT TTCGCTCACA 
    CGAGCTGTGT ACTACATAGT GATGCAGTGC TTAGGAGCTA TCTGTGGAGC 
    TGGTGTGGTC AAGGGGTTCC AGCCAAAGCA ATACCAGGCT TTGGGAGGTG 
    GAGCCAACAC CATAGCTCAT GGCTACACCA AAGGAAGTGG TCTTGGAGCT 
    GAGATTATTG GAACCTTTGT CCTTGTTTAC ACCGTCTTCT CTGCCACTGA 
    TGCCAAGAGA AACGCTCGTG ACTCTCATGT TCCTATTCTA GCACCGCTCC 
    CTATCGGATT CGCTGTGTTC TTGGTTCACT TAGCAACCAT CCCCATTACT 
    GGAACTGGAA TCAACCCAGC AAGAAGTCTT GGAGCTGCAA TCATCTTCAA 
    CAAGGACAAC GCTTGGGATG ACCACTGGGT CTTTTGGGTT GGACCATTCA 
    TTGGTGCTGC ACTTGCTGCT CTCTACCACG TTATAGTCAT CAGAGCCATC 
    CCATTCAAGT CCAGAAGCTA AAGCTGATTG AGTTCTATTT AAAATCTGGC 
    TTTTGTTCTT AGTTTGCTTT CTTTTGTGAA TCTACTACCT GTGTGTAACG 
    TGTGTATCTG TTGTCCTCTT CTTTGCCTAA TGGAGACTTA TGTAAAACAA 
    ATAAAAAAAA AAAAAAAAGA GCTCTTGGAT CCGAGTTATT TAAGCCAGGT 
    ATCAAAAACA TTCAAGGACG TGAACCAGAC GATTCAAGAA CATGGACCGT 
    GGGCTTCTCC TTGGGTTGGA GAATCTGGTG GAGCTTACAA TAGTGGTGGC 
    CGTCATGTTT CTGACACATT CATAGATAGC TTCTGGTATC TAGATCAGCT 
    TGGAATGTCA GCGAGACACA ACACTAAAGT TTACTGCAGA CAGACTTTGG 
    TTGGAGGGTT TTACGGCTTG CTCGAAAAGG GAACGTTTGT TCCAAATCCT 
    GATTACTATA GCGCGCTGCT TTGGCATCGT TTAATGGGAA AAGGGGTTCT 
    TGCGGTGCAG ACAGATGGAC CGCCACAGCT ACGGGTTTAC GCACATTGTT 
    CAAAAGGAAG AGCCGGTGTG ACATTGCTAC TGATAAATCT AAGCAATCAA 
    TCGGATTTTA CGGTTAGTGT CAGCAATGGC ATAAACGTGG TTTTGAATGC 
    GGAATCAAGG AAGAAGAAGT CATTGTTGGA TACTTTAAAA AGACCATTTT 
    CTTGGATTGG AAGCAAAGCT TCTGATGGAT ATTTGAATAG AGAAGAGTAT 
    CATCTGACAC CAGAAAACGG TGTGTTGCGC AGCAAAACAA TGGTCTTGAA 
    TGGTAAATCG TTAAAACCGA CGGCAACAGG AGATATCCCG AGCCTTGAAC 
    CGGTCCTCCG TAGTGTGAAC TCTCCGCTTA ATGTCTTGCC ATTGTCGATG 
    TCGTTCATTG TGTTACCTAA TTTTGATGCT TCTGCTTGTT CATGATGTTA 
    ATGGGGTCTC TCTTTGCTTA TTGGGAAAAA ATAAATAAAA ATAAAGAATA 
    GTTGTAATTA AAC

    Gene models with high sequence identity

    1. AT2G45960.1 [+] show detail - plasma membrane intrinsic protein 1B
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Major intrinsic protein 7.7e-64
    FPrintScan Major intrinsic protein 3e-70
    FPrintScan Major intrinsic protein 3e-70
    FPrintScan Major intrinsic protein 3e-70
    FPrintScan Major intrinsic protein 3e-70
    FPrintScan Major intrinsic protein 3e-70
    FPrintScan Major intrinsic protein 3e-70
    PatternScan Major intrinsic protein, conserved site 0
    HMMPanther HEPARANASE-RELATED 1.3e-179
    HMMPanther Glycoside hydrolase family 79, N-terminal 1.3e-179
    HMMPanther AQUAPORIN-RELATED 4.7e-195
    HMMPanther Major intrinsic protein 4.7e-195
    superfamily Major intrinsic protein 2.1e-60
    HMMTigr Aquaporin 4.5e-100
    HMMPfam Major intrinsic protein 1.6e-85
    HMMPfam Glycoside hydrolase family 79, N-terminal 1.2e-26

    See the detailed result >

    AT2G45960.1

    Model type
    Protein coding
    Short Description
    plasma membrane intrinsic protein 1B
    Curator Summary
    a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.
    Computational Description
    plasma membrane intrinsic protein 1B (PIP1B); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, response to salt stress, transport, water transport; LOCATED IN: anchored to plasma membrane, plasma membrane, chloroplast, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1;4 (TAIR:AT4G00430.1); Has 10777 Blast hits to 10745 proteins in 2215 species: Archae - 97; Bacteria - 5153; Metazoa - 1470; Fungi - 452; Plants - 2515; Viruses - 2; Other Eukaryotes - 1088 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR