F13632

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13632

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13632

Determination of introduced cDNA(s)

  • RAFL09-22-A19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-22-A19 - Resource: pda08034

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-22-A19 - full reading 
    TAGACTGAGT CTGGTTACTT GAAGGGGATC ATGTGAATAC GTCGACTGGT 
    AAAGAAAGAA AGATTGCTGC TTTTTAGATT TAGATTCGAG AATGTATGGA 
    AGATCTGGTC TTGACAGGTT TAAGAAGTCC CAAACTTCGG AACCCTTCTC 
    TGTATCAGCA AATCCTCCTC CGGTGGTACA ACAACATCTG TCTCCGGAGG 
    CATTGTCGGG GCAAAAAACT CAGATTGGAG CTGGTCAATC AAACTGGCAT 
    CCCCCTGATT GGGCGATTGA GCCTCGTGCC GGTGTCTACT CTCTGGAAGT 
    TGTGAAAGAC GGCCAGATCC TTGATCGGAT TCATCTAGAT AGACGAAGGC 
    ATATCTTCGG GAGACAACAT CAGACTTGTG ATTTTGTCCT TGATCATCAG 
    TCTGTTTCCC GCCAGCATGC CGCAGTTGTT CCTCACAAGA ATGGCAGCAT 
    CTTTGTGATT GACTTGGGAT CAGCTCATGG TACGTTTGTT GCAAATGAGA 
    GGTTGACTAA AGATACTCCT GTAGAGCTTG AAGTGGGTCA ATCCTTACGA 
    TTTGCTGCCT CCACAAGAAT CTACCTTCTG AGAAAGAACA GTGAGGCTCT 
    CTTTTCTCGC CCTCCACCTC CAGCTGAGAT TAAGCTTCCT CCACCTCCTG 
    ATGCTTCTGA TGAGGAAGCT GTTGTTGCTT ACAATACCTT GCTGAATCGA 
    TATGGTTTAA GCAATGGAGA ATCTGGTGGT ATGTTAGGGA AAAGGAAAGA 
    GAAGACCGGA TCAGAAGCGG GAGTGGCTAA GAGGATGAAG AAAGTGAGAG 
    TGAGCTTCAG GGATCAACTA GGAGGAGAGC TGGCTGAGAT TGTTGGCATG 
    TCTGATGGAG CAGACGTGGA AACAGAGCCT GGTCCTATAA ATGTCAAAGA 
    AGGAAGCCTC GTTGGGAAAT ATGAATCACT GGTGCGAGTG ACACTCATAC 
    CCAAAGGCAA AGTGAAGGAA GAGAAAGCCT TTACAGGAGG AACAAGAGGA 
    GGTGTAACAG ATCGACTCCA GGAAGCTATG AATATGTTGA AACGGGGTCC 
    AAAAACAGGG ATTTACGATG ACCTTTACGG TGGTGACTCA CTTGCCAAGG 
    CTGTTGGTAC GTCATGGGCT TCTGTGAGTC AACCAGCAGC TGAAACTGAA 
    TGTGGAGGGG TTGGTGAAGA AGATGATAAC GACGATCTGT TTGGTGACTA 
    ACTGATTTTG AACACTGAGA TTCCTTTAAG TAACTCTTCT TCTTCTCTAA 
    TGCCTACATT CCATTCCAAA GGCATTGGTA TGTTGTTTCC TCTTTGTCTA 
    TCCAATGGCT GCAGCAAGAA AAGAGAGCAG CTCTAAGCCC AGGCCCATTG 
    TCTTGTGTTA TAAGTAAGAA CCCTGAAATT TGATATGAGC TTGAGCCTGG 
    TCAGTGGTCA TTCTAGTTGT GGGTCTTAAC AGGAGATGCA TTACATAGAT 
    AGTCATTACA AATAGTGTGG AGAGTAGAGA GTAGGGCCAA TGCAAATGGA 
    GTGCATTTGA TTAGACCACT ACTGACTTAC AGATTCTCTC CTCAAGGCAG 
    ACCAATTCCA TCAGAAGAGG ACATTTGTAC TCAAATACCT CTCCTCTCAT 
    TCTTTTTCAC TTTTGCCTTT TTGCATTATT AAAACAGCAC ACTAATGATG 
    TGGGTTGACT TCCCTCTCCC CCACAAAAAC AGAGATTCCA TGTGGGGGGA 
    AATGGACAAC AAGTAAAACA CTTGTAAAAA TGGTAATCTG CCTCTGATGC 
    TTTAAGATAT GATTTGGGGA TCAATGCATC TTTGCTTTGG GATTTGCTTT 
    GTGACAGTTA GTATAAAGAA GAGAGAAGCT GAATGTGCTG CAACCAAATT 
    AAAACTCTCT TTTGAGTTAA GCCTATATCC AACTCCTACT CTTCCTAGTG 
    TGGTCCATTG TATTTATCAT AAGAGTAAAC TCGCTTGTAA TAAATTATAG 
    TAGGGAAAGG TGGAAGACCC ACTTTTGTTT CTC

    Gene models with high sequence identity

    1. AT5G47790.1 [+] show detail - SMAD/FHA domain-containing protein
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    superfamily SMAD/FHA domain 1.8e-28
    Gene3D Forkhead-associated (FHA) domain 8e-20
    ProfileScan Forkhead-associated (FHA) domain 13.114
    HMMSmart Forkhead-associated (FHA) domain 0.000000000000069
    HMMPanther NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 7.7e-116
    HMMPanther NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 7.7e-116
    HMMPfam Forkhead-associated (FHA) domain 7e-18

    See the detailed result >

    AT5G47790.1

    Model type
    Protein coding
    Short Description
    SMAD/FHA domain-containing protein
    Computational Description
    SMAD/FHA domain-containing protein ; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: SMAD/FHA domain-containing protein (TAIR:AT5G38840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR