F13644

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13644

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13644

Determination of introduced cDNA(s)

  • RAFL09-83-H02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-83-H02 - Resource: pda12380

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-83-H02 - full reading 
    ATCTCTCTCT ATCTCTTCTC CGCTCACAGC GAATCTCTCT CTCTCTCTCT 
    CTCTCTCTCT CTTCTCCGGT GTATTCCGTT CTCCGGGAAT TTCTCCGAAG 
    AGGGAGAGAG GAAAAAAAAA ACGTCCGATT CAATCTCTTC GTTGCTCGAC 
    GAATTTTTCT TAAGCTTTCC TTATTGGGAG CTGCAGGTGA CTCATCGAAA 
    TGCAGTGAAA TGAGTGTTGA TGAGAAGAGA CAGCTTGTTT ATGAACTGTC 
    GAAGCAATCA CATCTAGCTG CTGAGGTCTT GCAGGCATGG AGCCGCCAAG 
    AGATTCTACA GATCTTATGC GCAGAAATGG GAAAAGAAAG GAAGTATACT 
    GGTTTGACCA AAGTCAAGAT CATCGAGACC CTTTTGAAAA TTGTATCTGA 
    GAAAAACTCT GGAGAGTGTG AAGGGAAGAA GAGAGATTCT GATTGTTTGC 
    CTATTCAGAG AAACACTAAG AGACAAAGGA AGGTTGATAA TCCTTCTCGG 
    TATGTGATTC CAGCAACCAA CATTGTAACA AGCAACAATG CCTCAGGGAG 
    CTGCAGCTCG GTTAATACTA AAGGTGAGAG TACTACCATC TACTGCAAAA 
    ATTTGGCTTG TCGTGCTGTA CTGAGACAGG AAGACTCGTT TTGCAGAAGG 
    TGTTCATGTT GCATCTGTCG TAAGTATGAT GATAACAAAG ATCCTAGTCT 
    CTGGTTAACA TGTAGCTCAG ATCCTCCATT TGAGGGTGAG TCTTGCGGAT 
    TCTCGTGTCA TCTTGAATGT GCTTTCAACA CTGAAAAATC CGGTCTTGGA 
    AAAGACAAGC AAAGTGAGGG ATGCTGCTTC TATTGTGTCT CTTGCGGTAA 
    AGCAAACAGT TTGCTTGAAT GCTGGAAGAA GCAATTGACG ATTGCTAAAG 
    AAACCAGAAG GGTAGAAGTG CTTTGTTACC GTCTTTTCTT AGTCCAGAAA 
    CTATTGAAGA GCTCAACTAA ATACCGAAAT CTGTGTGAGG TTGTGGATGA 
    AGCTGTCAAG ACTCTTGAAG CTGATGTGGG TCCTCTCACT GGTCTTCCTA 
    TGAAAATGGG TAGAGGAATT GTAAACAGAC TTCATTCGGG ACCCGATGTG 
    CAGAAACTTT GCTCTTCTGC TCTTGAATCT CTTGAAACTA TAGCAACTAC 
    ACCTCCTGAT GTTGCTGCAT TACCTTCACC TCGCAGCTCC AAGATGCAGC 
    AAGATACAGC AACCACAGGA TCAACCAAGA TCAGGTTCGA GGATGTAAAC 
    GCGACTTCAC TTACAGTGGT TCTCGCCTCT AATGAAATTC CCTCACCTCC 
    AAACATCGTT CACTACAGTA TTTGGCATCG TAAGGTACCA GAAAAAGATT 
    ACCCGGAGAA ATCGACTTGC ACATTGTTTA TTCCAAACAC AAGATTTGTT 
    GTCTCTGGAT TAGCTCCAGC TTCTGAGTAC TGCTTCAAAG TTGTGTCCTA 
    TAGTGGAACC AGAGAAATGG GCGTTGATGA AATCAATGTT TTGACACGTA 
    GCGCTGAAGA AGGAGCGAAT TGCTCTTCGG CAGTGGAAAG AAGCGTAAGC 
    CCTCTCACAA ATTGCAGCAC ATTGTCTTCT AATCCTTCTT CTGTTGAAGC 
    TGAGTCCAAC AACGATTACA TTGTCCCAAA GAAGCCATCT TCAAAGAACG 
    AAGACAACAA TTCTCCTTCA GTCGATGAAA GTGCTGCGAA AAGGATGAAG 
    AGGACAACCG ACTCAGACAT TGTACAGATT GAGAAGGACG TTGAGCAGAT 
    TGTGTTGTTG GATGATGAAG AACAAGAAGC TGTTCTGGAT AAGACGGAAT 
    CTGAAACTCC AGTCGTGGTT ACTACGAAAA GTCTTGTTGG TAATCGAAAC 
    AGTTCAGATG CGAGTTTGCC AATTACTCCC TTCAGGTCAG ATGAAATCAA 
    GAACCGTCAA GCTAGAATCG AAATATCGAT GAAAGACAAC TGTAACAACG 
    GTGATCATTC AGCGAATGGA GGAACAGAAA GTGGATTAGA GCATTGTGTG 
    AAGATCATAA GACAACTCGA GTGTTCAGGA CATATCGATA AGAATTTCAG 
    ACAGAAGTTT CTGACTTGGT ATAGCTTGAG AGCAACGTCA CAAGAGATTA 
    GAGTTGTGAA GATATTCATT GATACATTTA TTGATGATCC CATGGCTTTG 
    GCTGAGCAGC TCATTGATAC TTTCGACGAC CGTGTTTCGA TAAAGCGTTC 
    TGCGGTTGGT GGTAGCGGTG CGTCTGCAGT TGTTCCATCT GGATTCTGTA 
    TGAAGTTGTG GCATTAGAGA ATGGGAACTT GTGCTCTGTT TTTTTCAAGT 
    CATTTTCAAA ACGTTATTCT AATTATTGGG AAATTTGCAT TATTGGAACA 
    TTTCCATGCA AGAACAGTAG TACTGTTGCT ATCGAATAGA TCGTCTTTGT 
    CGGATTATTT ATTTATTTTT AGTGGATTTG ATTCCATTTA TAATTTAGTA 
    ATTAGTCCTA GACTGAATTA TTCTTATTTC GTTGAC

    Gene models with high sequence identity

    1. AT4G30200.1 [+] show detail - vernalization5/VIN3-like
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Fibronectin, type III 11.324
    HMMPfam Protein of unknown function DUF1423, plant 1e-09
    HMMPfam Fibronectin, type III 5.6e-05
    superfamily Fibronectin, type III-like fold 5.8e-07
    HMMPanther VERNALIZATION-INSENSITIVE PROTEIN 3 3.8e-291
    HMMPanther VERNALIZATION-INSENSITIVE PROTEIN 3 3.8e-291

    See the detailed result >

    AT4G30200.1

    Model type
    Protein coding
    Short Description
    vernalization5/VIN3-like
    Curator Summary
    Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.
    Computational Description
    vernalization5/VIN3-like (VEL1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: Fibronectin type III domain-containing protein (TAIR:AT5G57380.1); Has 270 Blast hits to 250 proteins in 39 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 14; Plants - 239; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR