F13705

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large)

Invisible phenotypes

Seed::deep red

Original: F13705

Determination of introduced cDNA(s)

RAFL11-01-N17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-01-N17 - Resource: pda07024

full reading [+] show sequence

AGAGAGAAAG TGTGAAACCA ACTTGTTCAT ATTGAAAAGA ACCATTGCTC 
TCTAGATTAA AAGCTTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT 
CTCTCTCTCT CTCTTTTGGA CTTTCTCAAT CCATATCCCT CTCTCTGTTT 
TTTCTAATTT GAGCCTCTAA AGTCTCCTCG TTTTGTTCAT GTTGTTGTTC 
AAGTGAAGAA GCTCAATTAT GTTTACAACA TTGTTGTAAT TTCAAAACTT 
CATAAGAATT TCTCTGATAA TAAAGAAAAA GCTGGAGTAG AACTATTTTA 
AAGTGTCATC ATGAAGAGAC TAAGCAGCTC AGATTCAATG TGTGGTCTGA 
TCTCCACTTC TACAGATGAA CAGAGTCCAA GAGGGTACGG AAGTAATTAC 
CAATCTATGC TTGAAGGTTA CGATGAAGAT GCTACACTAA TCGAGGAATA 
TTCCGGCAAC CACCACCACA TGGGTCTATC GGAGAAGAAG AGAAGATTAA 
AAGTTGACCA AGTCAAAGCT CTTGAGAAGA ATTTCGAACT TGAGAATAAA 
CTCGAACCTG AGAGGAAAAC TAAATTAGCA CAAGAGCTTG GACTTCAACC 
TCGTCAAGTA GCTGTTTGGT TTCAGAACCG TCGTGCACGG TGGAAAACAA 
AACAGCTTGA AAAAGATTAC GGTGTTCTTA AGGGTCAATA CGATTCTCTC 
CGCCACAATT TCGATTCTCT CCGCAGTGAC AATGATTCCC TTCTCCAAGA 
GATTAGTAAA ATCAAAGCTA AGGTAAACGG TGAAGAAGAT AACAACAACA 
ACAAAGCTAT TACGGAGGGT GTTAAGGAAG AGGAAGTTCA CAAGACGGAT 
TCGATTCCTT CGTCTCCTCT GCAGTTTCTA GAACATTCCT CTGGTTTTAA 
CTACCGGCGA AGCTTCACTG ACCTCCGTGA CCTTCTACCG AATTCCACCG 
TTGTCGAGGC TGGATCTTCC GATAGTTGCG ATTCAAGCGC CGTTCTTAAC 
GACGAAACAA GTTCTGATAA CGGAAGATTG ACGCCGCCTG TGACGGTTAC 
TGGCGGGAGT TTCTTACAGT TTGTGAAAAC AGAGCAAACA GAGGATCACG 
AGGATTTTCT AAGCGGTGAA GAAGCTTGTG GTTTCTTCTC CGATGAACAG 
CCGCCGTCAC TTCATTGGTA CTCTGCTTCA GATCATTGGA CTTGAGAATT 
GTTTATCAAA TTGGTGCTCT GTTTAGTCTC AATGGGAAAA CAGAGAAGAG 
GGCAAAGGTG GAATAATTGA TAAATAAGGA TTAAGGATGA AGGGGATTAT 
TAAATTAAAT CCGCGGGAGA AGTTAATTTT GGGTTTAAGA TTGTAATGGC 
TCTTCATGTA ATTAACGATG TCGAGAGGGG CTTTCACAGA AATAGGAATC 
AATGGGGACA CTCTGATATG AAAGCAATAA AACTACGTTT GACCCCTT

Gene models with high sequence identity

AT4G40060.1 [+] show detail - homeobox protein 16
E-value: 0; Score: 99.86

InterPro Scan Digest

Program	Description	E-value
HMMPanther	HOMEOBOX PROTEIN PRH	6.8e-13
HMMPanther	HOMEOBOX PROTEIN	6.8e-13
Coil	coiled-coil	0
Coil	coiled-coil	0
superfamily	Homeodomain-like	2.9e-18
HMMPfam	Homeobox	3.3e-16
HMMPfam	Leucine zipper, homeobox-associated	2.4e-15
FPrintScan	Helix-turn-helix motif, lambda-like repressor	6.8e-06
FPrintScan	Helix-turn-helix motif, lambda-like repressor	6.8e-06
Gene3D	Homeodomain-related	7.9e-14
ProfileScan	Homeobox	16.86
PatternScan	Homeobox, conserved site	0
HMMSmart	Homeobox	4.3e-17

See the detailed result >

AT4G40060.1

Model type: Protein coding
Short Description: homeobox protein 16
Curator Summary: Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Computational Description: homeobox protein 16 (HB16); FUNCTIONS IN: sequence-specific DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 6 (TAIR:AT2G22430.1); Has 9713 Blast hits to 9689 proteins in 534 species: Archae - 2; Bacteria - 4; Metazoa - 7673; Fungi - 210; Plants - 1646; Viruses - 5; Other Eukaryotes - 173 (source: NCBI BLink).
Link: InterPro Scan - TAIR