F13717

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13717

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F13717

Determination of introduced cDNA(s)

  • RAFL06-83-K09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-83-K09 - Resource: pda03858

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-83-K09 - full reading 
    GCTGTATCAT CTTCTTCTTC TACTTCGTCC TCATCATCGT CACATAGATC 
    CTCCTTTTTC GTTAATTGGG GAGAGATATA CTTTCTTTTG AGGATCAGAT 
    CGTGACAGGG TTTAGCTCAA GGAGAGGGTG AGAAAAAGAA GAAGAAGGTG 
    AGAAAAGTGA AGGCAAGGCT TTGAGGATGT CTTTTACAGG AACTCAACAG 
    AAATGCAAGG CTTGTGAGAA GACTGTTTAT GCTGTTGAGC TTCTCTCTGC 
    TGATGGAGTT GGATATCACA AGTCTTGCTT CAAATGCACT CACTGCAAAA 
    GCAGGCTTCA GCTGAGTAGT TACTCATCAA TGGAAGGTGT TTTGTACTGT 
    AAGCCTCATT TTGAGCAGCT CTTTAAGGAG AGTGGTAGTT TCAACAAGAA 
    CTTTCAGTCA CCTGCAAAAT CGGCTGACAA ATCAACTCCT GAGCTGACAA 
    GGACGCCTAG CCGAGTTGCT GGCAGGTTCT CTGGTACACA AGAGAAATGC 
    GCCACTTGTA GTAAAACTGT GTATCCTATT GAAAAGGTAA CAGTCGAGAG 
    CCAGACATAT CACAAGTCCT GCTTCAAGTG CTCACATGGA GGTTGCCCAA 
    TTTCACCTTC CAACTACGCA GCTCTTGAAG GAATCCTGTA CTGCAAGCAC 
    CATTTCGCTC AGCTCTTCAA GGAGAAGGGA AGTTACAACC ACTTAATCAA 
    ATCCGCTTCC ATCAAACGCT CTGCAGCCGC AGCAGTCGCC GCCGGTGTAC 
    CAGCAGCCTC CGTTCCTGAA TCTTAAAATC CAATAATTTC TCCTCTCTAG 
    TCTAAAATTT GAAGTTAATG CCAAACTGAT TCAGTTTGAT TTCTCTTTGT 
    GAGAGCGTGT GTGTAATCTA TGCTTTGATG TTCTTATTTC CATTGATGTC 
    TCCTAAAATT CTATGTTTGT GTGGTGATTT GGTTATCTAT AAAAAGTCTG 
    AAACTTTCCT CAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT3G55770.1 [+] show detail - GATA type zinc finger transcription factor family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther TRANSCRIPTION FACTOR L2 6.9e-59
    HMMPanther LIM DOMAIN CONTAINING PROTEIN 6.9e-59
    HMMSmart Zinc finger, LIM-type 5.4e-13
    HMMSmart Zinc finger, LIM-type 1.2e-13
    Gene3D Zinc finger, LIM-type 5.2e-21
    Gene3D Zinc finger, LIM-type 5.4e-21
    superfamily Glucocorticoid receptor-like (DNA-binding dom 2.9e-18
    superfamily Glucocorticoid receptor-like (DNA-binding dom 4.3e-16
    superfamily Glucocorticoid receptor-like (DNA-binding dom 1.4e-07
    superfamily Glucocorticoid receptor-like (DNA-binding dom 2.8e-05
    HMMPfam Zinc finger, LIM-type 7.9e-14
    HMMPfam Zinc finger, LIM-type 5e-14
    PatternScan Zinc finger, LIM-type 0
    ProfileScan Zinc finger, LIM-type 13.751
    ProfileScan Zinc finger, LIM-type 12.573

    See the detailed result >

    AT3G55770.1

    Model type
    Protein coding
    Short Description
    GATA type zinc finger transcription factor family protein
    Computational Description
    GATA type zinc finger transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G39900.1); Has 5098 Blast hits to 3614 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 4118; Fungi - 82; Plants - 503; Viruses - 0; Other Eukaryotes - 395 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR