F13720

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13720

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13720

Determination of introduced cDNA(s)

RAFL09-14-B02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-14-B02 - Resource: pda05438

full reading [+] show sequence

ACACACACAA CCACCAAACA CAAAGCTTTT CAAAACCCAG AGAAAATGTT 
CATCGAGAGC TTCAAAGTAG AGAGTCCAAA TGTCAAATAC ACAGAGAATG 
AGATCAATTC GGTGTACGAT TACGAAACAA CAGAGGTCGT CCACGAGAAT 
CGTAACGGTA CATATCAATG GGTCGTGAAG CCAAAGACTG TCAAATACGA 
TTTCAAAACA GACACTCGTG TCCCCAAATT AGGGGTTATG CTTGTTGGTT 
GGGGAGGAAA CAATGGATCA ACACTAACCG CTGGTGTCAT TGCTAACAAA 
GAAGGAATAT CGTGGGCGAC TAAAGACAAA GTGCAACAAG CTAATTACTT 
TGGTTCACTT ACTCAAGCTT CATCGATTCG TGTTGGCTCT TACAATGGTG 
AAGAGATCTA TGCTCCTTTC AAGAGTCTTC TTCCAATGGT GAATCCAGAG 
GATGTTGTGT TTGGTGGTTG GGATATAAGT GACATGAATT TAGCAGACGC 
TATGGCTAGA GCTAGAGTTC TTGATATTGA TCTGCAGAAA CAACTTAGAC 
CTTACATGGA GAACATGATC CCACTTCCTG GTATCTATGA CCCTGATTTC 
ATCGCTGCTA ATCAAGGTTC ACGTGCTAAT AGCGTGATCA AAGGTACCAA 
GAAGGAACAA GTTGATCACA TCATCAAGGA CATGAGGGAG TTTAAGGAGA 
AGAACAAAGT GGATAAGTTG GTTGTGTTAT GGACTGCAAA CACAGAGCGT 
TATAGCAATG TGATTGTAGG ACTTAACGAT ACGACGGAGA ATCTATTGGC 
TTCTGTTGAA AAGGACGAGT CTGAGATCTC GCCGTCTACG TTGTATGCGA 
TTGCTTGTGT TCTTGAAGGC ATTCCTTTCA TCAATGGGAG TCCTCAGAAT 
ACTTTTGTCC CCGGTCTTAT CGAATTGGCT ATATCGAAGA ATTGTTTGAT 
TGGTGGGGAT GATTTCAAGA GTGGTCAGAC TAAGATGAAA TCCGTTTTGG 
TTGATTTCCT TGTTGGAGCT GGCATTAAGC CTACTTCGAT TGTGAGCTAT 
AATCATTTGG GAAACAACGA CGGGATGAAC CTCTCAGCGC CACAGACTTT 
CCGCTCTAAG GAGATTTCAA AGAGCAATGT TGTAGACGAC ATGGTAGCTA 
GTAATGGCAT CCTCTTTGAG CCTGGTGAAC ACCCTGACCA TGTCGTTGTC 
ATCAAGTATG TGCCATATGT TGCGGATAGT AAAAGAGCAA TGGATGAGTA 
CACGTCTGAG ATATTCATGG GAGGGAGGAA CACTATAGTG TTGCATAACA 
CTTGTGAGGA CTCTCTCTTG GCTGCACCAA TTATCTTGGA TCTTGTCCTT 
CTCGCTGAAC TCAGCACCAG AATCCAATTT AAAGCTGAAG GAGAGGGGAA 
GTTTCACTCT TTCCACCCGG TAGCTACCAT ACTCAGTTAC CTCACAAAGG 
CACCTCTTGT ACCGCCCGGA ACACCGGTGG TTAACGCTCT GTCGAAGCAG 
CGGGCAATGC TGGAAAACAT TCTTAGGGCA TGTGTTGGGC TTGCGCCAGA 
GAACAACATG ATCATGGAGT ACAAGTGAAG GATGAGGAAG AAGAAGTAAA 
GGTACCTAAG ATGACCTTAG GATATGAAGG ACACTGCTCC ATTGTTTCAT 
TTATATATAT CATTTTGTAT GTATATTATA TGAATGTGTG TGTGACGGAT 
AATATGGATA AGCTTAGGGT TAACTTGTGT GATATGGATC TGGTCGGTTT 
ATTTGGTGAG AAGATTAGCT AAGCTTTTGG ATCAAATGTG TAAAAGATTT 
AAGTAATTAT GCTTGTGTCT CCTTGTAATA TAACCAAACT TATGATCTAT 
GAATATGGAT TTTC

Gene models with high sequence identity

AT2G22240.1 [+] show detail - myo-inositol-1-phosphate synthase 2
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	NAD(P)-binding domain	1.9e-84
HMMPIR	Myo-inositol-1-phosphate synthase	2.7e-281
HMMPfam	Myo-inositol-1-phosphate synthase	8.2e-118
HMMPfam	Myo-inositol-1-phosphate synthase, GAPDH-like	6.2e-46
superfamily	NAD(P)-binding domain	3.4e-167
superfamily	Glyceraldehyde-3-phosphate dehydrogenase-like	1.1e-45
HMMPanther	Myo-inositol-1-phosphate synthase	0

See the detailed result >

AT2G22240.1

Model type: Protein coding
Short Description: myo-inositol-1-phosphate synthase 2
Curator Summary: ** Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocalization experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.
Computational Description: myo-inositol-1-phosphate synthase 2 (MIPS2); CONTAINS InterPro DOMAIN/s: Myo-inositol-1-phosphate synthase (InterPro:IPR002587), Myo-inositol-1-phosphate synthase, GAPDH-like (InterPro:IPR013021), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: myo-inositol-1-phosphate synthase 1 (TAIR:AT4G39800.1); Has 1859 Blast hits to 1855 proteins in 512 species: Archae - 101; Bacteria - 453; Metazoa - 126; Fungi - 158; Plants - 764; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).
Link: InterPro Scan - TAIR