F13720

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13720

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13720

Determination of introduced cDNA(s)

  • RAFL09-14-B02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-14-B02 - Resource: pda05438

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-14-B02 - full reading
    ACACACACAA CCACCAAACA CAAAGCTTTT CAAAACCCAG AGAAAATGTT 
    CATCGAGAGC TTCAAAGTAG AGAGTCCAAA TGTCAAATAC ACAGAGAATG
    AGATCAATTC GGTGTACGAT TACGAAACAA CAGAGGTCGT CCACGAGAAT
    CGTAACGGTA CATATCAATG GGTCGTGAAG CCAAAGACTG TCAAATACGA
    TTTCAAAACA GACACTCGTG TCCCCAAATT AGGGGTTATG CTTGTTGGTT
    GGGGAGGAAA CAATGGATCA ACACTAACCG CTGGTGTCAT TGCTAACAAA
    GAAGGAATAT CGTGGGCGAC TAAAGACAAA GTGCAACAAG CTAATTACTT
    TGGTTCACTT ACTCAAGCTT CATCGATTCG TGTTGGCTCT TACAATGGTG
    AAGAGATCTA TGCTCCTTTC AAGAGTCTTC TTCCAATGGT GAATCCAGAG
    GATGTTGTGT TTGGTGGTTG GGATATAAGT GACATGAATT TAGCAGACGC
    TATGGCTAGA GCTAGAGTTC TTGATATTGA TCTGCAGAAA CAACTTAGAC
    CTTACATGGA GAACATGATC CCACTTCCTG GTATCTATGA CCCTGATTTC
    ATCGCTGCTA ATCAAGGTTC ACGTGCTAAT AGCGTGATCA AAGGTACCAA
    GAAGGAACAA GTTGATCACA TCATCAAGGA CATGAGGGAG TTTAAGGAGA
    AGAACAAAGT GGATAAGTTG GTTGTGTTAT GGACTGCAAA CACAGAGCGT
    TATAGCAATG TGATTGTAGG ACTTAACGAT ACGACGGAGA ATCTATTGGC
    TTCTGTTGAA AAGGACGAGT CTGAGATCTC GCCGTCTACG TTGTATGCGA
    TTGCTTGTGT TCTTGAAGGC ATTCCTTTCA TCAATGGGAG TCCTCAGAAT
    ACTTTTGTCC CCGGTCTTAT CGAATTGGCT ATATCGAAGA ATTGTTTGAT
    TGGTGGGGAT GATTTCAAGA GTGGTCAGAC TAAGATGAAA TCCGTTTTGG
    TTGATTTCCT TGTTGGAGCT GGCATTAAGC CTACTTCGAT TGTGAGCTAT
    AATCATTTGG GAAACAACGA CGGGATGAAC CTCTCAGCGC CACAGACTTT
    CCGCTCTAAG GAGATTTCAA AGAGCAATGT TGTAGACGAC ATGGTAGCTA
    GTAATGGCAT CCTCTTTGAG CCTGGTGAAC ACCCTGACCA TGTCGTTGTC
    ATCAAGTATG TGCCATATGT TGCGGATAGT AAAAGAGCAA TGGATGAGTA
    CACGTCTGAG ATATTCATGG GAGGGAGGAA CACTATAGTG TTGCATAACA
    CTTGTGAGGA CTCTCTCTTG GCTGCACCAA TTATCTTGGA TCTTGTCCTT
    CTCGCTGAAC TCAGCACCAG AATCCAATTT AAAGCTGAAG GAGAGGGGAA
    GTTTCACTCT TTCCACCCGG TAGCTACCAT ACTCAGTTAC CTCACAAAGG
    CACCTCTTGT ACCGCCCGGA ACACCGGTGG TTAACGCTCT GTCGAAGCAG
    CGGGCAATGC TGGAAAACAT TCTTAGGGCA TGTGTTGGGC TTGCGCCAGA
    GAACAACATG ATCATGGAGT ACAAGTGAAG GATGAGGAAG AAGAAGTAAA
    GGTACCTAAG ATGACCTTAG GATATGAAGG ACACTGCTCC ATTGTTTCAT
    TTATATATAT CATTTTGTAT GTATATTATA TGAATGTGTG TGTGACGGAT
    AATATGGATA AGCTTAGGGT TAACTTGTGT GATATGGATC TGGTCGGTTT
    ATTTGGTGAG AAGATTAGCT AAGCTTTTGG ATCAAATGTG TAAAAGATTT
    AAGTAATTAT GCTTGTGTCT CCTTGTAATA TAACCAAACT TATGATCTAT
    GAATATGGAT TTTC

    Gene models with high sequence identity

    1. AT2G22240.1 [+] show detail - myo-inositol-1-phosphate synthase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D NAD(P)-binding domain 1.9e-84
    HMMPIR Myo-inositol-1-phosphate synthase 2.7e-281
    HMMPfam Myo-inositol-1-phosphate synthase 8.2e-118
    HMMPfam Myo-inositol-1-phosphate synthase, GAPDH-like 6.2e-46
    superfamily NAD(P)-binding domain 3.4e-167
    superfamily Glyceraldehyde-3-phosphate dehydrogenase-like 1.1e-45
    HMMPanther Myo-inositol-1-phosphate synthase 0

    See the detailed result >

    AT2G22240.1

    Model type
    Protein coding
    Short Description
    myo-inositol-1-phosphate synthase 2
    Curator Summary
    ** Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocalization experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.
    Computational Description
    myo-inositol-1-phosphate synthase 2 (MIPS2); CONTAINS InterPro DOMAIN/s: Myo-inositol-1-phosphate synthase (InterPro:IPR002587), Myo-inositol-1-phosphate synthase, GAPDH-like (InterPro:IPR013021), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: myo-inositol-1-phosphate synthase 1 (TAIR:AT4G39800.1); Has 1859 Blast hits to 1855 proteins in 512 species: Archae - 101; Bacteria - 453; Metazoa - 126; Fungi - 158; Plants - 764; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR