F13722

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13722

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F13722

Determination of introduced cDNA(s)

  • RAFL05-16-K16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-K16 - Resource: pda07362

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-K16 - full reading 
    AGTAATCCAT TTGCTGCTCT GTAGTGGAAG TAGTTGTTGT TGTTGTTGCA 
    GAAGAATCCG AATCCAATTC AATGAGTCTT CTTCGTCTTC TCCTCGTTGT 
    TGTTGTTCTT CATCTTTCTG CGGTGGCCGG CGACGACGCC ATCGTCTCCA 
    GATTCCAGGA GTACCTCCGA ATCAACACGG TTCAGCCCAA CCCGGAATAC 
    TACAAAGCCG TTGACTTTAT AATATCTCAG GCGAAACCAC TGTCCCTCGA 
    ATCTCAGACG ATCGAATTTG TAAAAGGAAA GCCGCTTCTC CTCCTCAAAT 
    GGGTTGGCTC CGACCCAACC CTACCTGCCT TTCTCCTCAA CTCCCACACC 
    GATGTCGTTC CCTTCGAGGA CTCCAAGTGG ACTCACCATC CGCTCCAAGC 
    TCACATGGAC CACCATGGCG ACATCTATGC CAGGGGTTCC CAGGACATGA 
    AGTGCGTCGG GATGCAGTAC CTCGAGGCCA TACGCAAGCT CCAGGCTTCT 
    GGCTTCAAGC CACTCCGATC CGTCTATCTC TCCTTCGTCC CCGATGAAGA 
    GATTGGCGGC CACGATGGCG CAGAGAAGTT TGCTGAATCC CAATTATTCA 
    AGAGCTTGAA CATCGCAATC GTGCTCGACG AAGGCCTGCC ATCGCCTACT 
    GAGAGTTACA GAGTATTCTA TGGAGAGAGG AGTCCCTGGT GGCTGGTGAT 
    TAAGGCTAAA GGTCCACCTG GCCACGGTGC CAAGCTCTAT GACAACTCTG 
    CCATGGAGAA TCTGCTCAAA AGCATTGAGA GTATTCGCAG ATTCAGAGCT 
    TCTCAGTTCG ATCTTCTCAA AGCTGGTGGG ATAGCTGAAG GCGATGTTGT 
    CTCTGTGAAC ATGGCCTTCC TCAAGGCTGG CACACCTTCT CCAACTGGTT 
    TCGTAATGAA TCTGCAACCA TCTGAGGCAG AAGCTGGTTT CGACATTCGT 
    GTTCCACCCA GCGTTGATGC TGAAGCACTC GAAAGACGTT TAGTGGAGGA 
    ATGGGCTCCA GCAGCACGAA ACATGTCCTT TGAGTTCAAG CAGAAGCTTA 
    CGGGGAAGCA ATTCCTTACA GCAGCAGATG ATTCAAATCC TTGGTGGGGG 
    CTCTTGGAAA ATGCTGTTAA GGAAGCCGGA GGTAGGACCA GTAAGCCTGA 
    GATTTTCCCT GCATCAACGG ATGCTCGCTA CTTTCGCAAG GCTGGCGTGC 
    CTGCCTTTGG GTTCTCTCCC ATATCAAACA CCCCGAGTCT GCTTCATGAC 
    CACAATGAGT ATTTGGGTAA AGCTGAGTAC TTGAAAGGCA TTGAGGTGTA 
    TGTTTCAATC ATCAAAGCTT ATGCATCATA TGAAAGCAAA AGTGGTTCAC 
    GAGATGAGTT ATGAGGGTCT CAACACAGCC CATTCAAGTC TTCCTTTCGC 
    AAATTTGTAC AATCAATAAG ATCTGAATCC ATCCTGTGTT TGTTGTGGTA 
    AATCAGAGAC ATCTTGTTCT TGTTGTGAGA CAGTTGGCAT TGGCAAATTG 
    TATTATTCAT TCCTGCTTTT TCAATGCTTC TTCTTTTTTC TC

    Gene models with high sequence identity

    1. AT4G38220.1 [+] show detail - Peptidase M20/M25/M40 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.2e-51
    HMMPIR N-acyl-L-amino-acid amidohydrolase 2.7e-299
    PatternScan ArgE/DapE/ACY1/CPG2/YscS, conserved site 0
    superfamily Zn-dependent exopeptidases 1.8e-72
    superfamily Peptidase M20, dimerisation 1.2e-06
    HMMPanther AMINOACYLASE-1 8.3e-212
    HMMPanther PEPTIDASE M20 FAMILY MEMBER 8.3e-212
    HMMPfam Peptidase M20 5.9e-35
    HMMPfam Peptidase M20, dimerisation 8.9e-05
    HMMTigr N-acyl-L-amino-acid amidohydrolase 0

    See the detailed result >

    AT4G38220.1

    Model type
    Protein coding
    Short Description
    Peptidase M20/M25/M40 family protein
    Computational Description
    Peptidase M20/M25/M40 family protein; FUNCTIONS IN: metallopeptidase activity, hydrolase activity, aminoacylase activity; INVOLVED IN: response to zinc ion; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ArgE/DapE/ACY1/CPG2/YscS, conserved site (InterPro:IPR001261), Peptidase M20 (InterPro:IPR002933), N-acyl-L-amino-acid amidohydrolase (InterPro:IPR010159), Peptidase M20, dimerisation (InterPro:IPR011650); BEST Arabidopsis thaliana protein match is: Peptidase M20/M25/M40 family protein (TAIR:AT1G44820.1); Has 7635 Blast hits to 7629 proteins in 1864 species: Archae - 183; Bacteria - 5555; Metazoa - 388; Fungi - 290; Plants - 78; Viruses - 2; Other Eukaryotes - 1139 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR