F13730

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13730

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
whole plant flowering stage (PO:0007016)
  • late (PATO:0000693)
    (Adult plant::Flowering::late)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13730

Determination of introduced cDNA(s)

  • RAFL04-20-E13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-20-E13 - Resource: pda07210

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-20-E13 - full reading 
    AGCAGATTTT ACATGCGAAG GGCAACCGCT AGAACTACCT GAATCAGTGG 
    TTCCAGAAGC CTTTAGAGAA TGGGAAGTGA AGGTGTTCGA TTGGCAGACG 
    CAGTGTCCCA CTCTTGCCCA GCCCAACTCA CTATCCTTTC TTTACAAGTC 
    CATCAAACTC CTCCCCACCG TTGGATGTGA AGCTGATGCA GCCACCCGTT 
    ACAGCATCGA CCAGAGGATC ATCGGGGGAG GCAAATCCTC TGCATTAGCC 
    TTTTCGTATT CTGTCACTGG CTCCTATGTC GCTGTGTGGC CTTTGCGGAA 
    CAACCAGCTT GAGGTGGAGC ATTGTCTGAT CAATCCAAAG GACAAGGAGT 
    CTCGTGTGAG GATTTTCCAG GTTGTCAGCT TAGCAGAGAC CACCAACATG 
    TCCTTGCAGA GTGTCAAAGT TTTCTGTGAG CAGTGGTACG GTCCGTTCAG 
    AGATGGCGAT CAGCTTGGAG GCTGTGCCAT CCGTAGCTCC GGCTTTGCTG 
    CTACACCTAC CACTGCAGCT TCAGTGGTTA CCGGTTCTTG GAGAGTTCTA 
    CTTGCTACCA CTAGCTTTCA CGCCTCTGAT TTCGGTTGTA TACAACAAGT 
    TACTGGCGAG AAGGTGATTG AGATTGTGAG AGAAGAAAAT GATCTTTTAT 
    TGCTTCCGCA AGAGCTGTGG TGCTCACTCC AACAAGGCAA AGACCGCGAA 
    AGAGTATTTT CAGTAGGATG GGTCTTTGAG CCAGGCCATG CTATCACATC 
    CAGCTGCGTC TTCTCTAGCG ATTCTAAGCT AAAGGAGGTA ACAATGGGGA 
    GAGAGACTGC TCTATCAGAT GTATGATCAA TAATCGTTTA AATCTCCACA 
    GATCATTCTT ATAATTTTCT TTGTAGGATG TGTGCACATA AGTCAAATTA 
    CAATAATCTC ATATGACTTC CTATACTGAT GTTTGATTCA GTTTATCTGT 
    TAATAATACA TATCAGTTCG TTTTAAAAAA AAAAG

    Gene models with high sequence identity

    1. AT4G38225.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PROTEASE-RELATED 4.3e-212
    HMMPanther PEPTIDASE M20 FAMILY MEMBER 4.3e-212
    HMMPfam Domain of unknown function DUF3598 0.00013

    See the detailed result >

    AT4G38225.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR