F13744

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13744

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13744

Determination of introduced cDNA(s)

  • RAFL14-09-K17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-09-K17 - Resource: pdz88420

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL14-09-K17 - 5 prime EST
    AACCGGTAAG ATCCAGAGAT TGATTGAATC AGCTTACTAT TTTATATAAT 
    TCAGTTTGTT GTTCCTCAGA CTTGTAACTA GGACAGTCTT CTCATGAATC
    ATGACTTCTT CAGTACATGA GCTCTCTGAT AACAATGAAA GTCATGCGAA
    GAAAGAACGT CCAGATTCCC AAACCCGACC ACAGGTTCCT TCAGGACGAA
    GTTCGGAATC TATTGATACA AACTCTGTCT ACTCAGAGCC CATGGCACAT
    GGATTATACC CGTATCCAGA TCCTTACTAC AGAAGCGTCT TTGCACAGCA
    AGCGTATCTT CCACATCCCT ATCCTGGGGT CCAATTGCAG TTAATGGGAA
    TGCAGCAGCC AGGAGTTCCA TTGCAATGTG ATGCAGTCGA GGAACCTGTT
    TTTGTTAACG CAAAGCAATA CCATGGTATA CTCAGGCGCA GGCAATCCCG
    GGCAAAACTT GAGGCACGAA ATAGAGCCAT CAAAGCAAAA AAGCCATACA
    TGCATGAATC TCGGCATTTA CATGCGATAA GACGGCCAAN ANGATGTGGT
    GGCCGGTTTC TAATGCCAGA AGGAAAATGG AGACCNCAGG GGGGNGGNGG

    Gene models with high sequence identity

    1. AT2G34720.1 [+] show detail - nuclear factor Y, subunit A4
      E-value: 0; Score: 99.31

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL14-09-K17 - 3 prime EST
    GCCTTTATTA TTTAGTTTGT TCAACTTCAA GCTCTTCTTA ACGCTAAATT 
    TTCTGGGGGA TTTCTTGGAG TCTTCTGATG CAGCTTGAGC AGAAGCCATC
    TCCACATCTT CCATAGTAAC AAGACCCTTC TCCACCATAT CTTTCTGCTC
    TCTGGGCCAT TTGCGAAGGA GCTTTCTCTG ACGTTTGCCG GAGACGGAGG
    GGACCGGAGT TCTGGTCTTC AATTTATTGG TGAGAGGATC GCCGTGAATG
    GCTCGTTTTC TATCGGCTTT AGCCTCTCTC TTCTTCTTCG CAACTCTCGT
    TGTACTTGGC ATCTTACTAC TCTCAGTTTT TTTTTTTTTT TTAGCTAAGA
    ACATTAATTT ACTTTCCAAA AAATGAGTTA TTGGCAAAGA ATATCAATTT
    GGTACAACAA TACTTCCAAC TCACACTTTT CAT

    Gene models with high sequence identity

    1. AT1G08580.1 [+] show detail - unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazo...
      E-value: 7e-172; Score: 99.07

    AT1G08580.1

    Model type
    Protein coding
    Computational Description
    unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

    AT2G34720.1

    Model type
    Protein coding
    Short Description
    nuclear factor Y, subunit A4
    Computational Description
    "nuclear factor Y, subunit A4" (NF-YA4); CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A7 (TAIR:AT1G30500.2); Has 682 Blast hits to 682 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 131; Plants - 381; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR