F13809

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13809

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13809

Determination of introduced cDNA(s)

  • RAFL05-18-D03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-D03 - Resource: pda01399

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-18-D03 - full reading 
    ACCTGTTCAA CGAAACTCCT GAGCTCAGCT TCACTTTGCT CGACGTTATC 
    TTCTTCGTTC AGCGACAATG GCGTCGATTA CGAACCTCGC CTCTTCTCTC 
    TCTTCACTCT CGTTCTCCTC CCAAGTTTCT CAAAGACCTA ACACCATTTC 
    CTTCCCCCGC GCGAATTCAG TATTCGCATT ACCGGCGAAA TCCGCACGCC 
    GCGCTTCTCT ATCTATCACC GCCACGGTAT CTGCTCCACC GGAGGAGGAG 
    GAGATAGTTG AACTGAAGAA ATACGTCAAA TCGAGGCTTC CCGGAGGATT 
    TGCTGCTCAG AAGATTATTG GCACTGGACG ACGTAAGTGC GCAATCGCTA 
    GAGTTGTTCT TCAGGAAGGT ACTGGGAAGG TTATCATCAA CTATCGTGAT 
    GCCAAGGAGT ACCTTCAGGG AAATCCATTG TGGCTTCAGT ATGTTAAAGT 
    ACCATTGGTG ACTTTAGGAT ATGAGAATAG CTACGACATA TTTGTGAAAG 
    CCCATGGAGG CGGTCTCTCA GGTCAAGCTC AAGCAATTAC CTTGGGAGTC 
    GCACGTGCAC TCCTGAAGGT AAGTGCAGAC CACAGATCGC CTTTGAAGAA 
    GGAAGGTTTG CTCACTAGAG ATGCGAGAGT GGTTGAAAGA AAGAAGGCCG 
    GGCTCAAGAA GGCGCGTAAA GCCCCACAAT TCTCCAAGCG TTAAGAGTTT 
    TACATATCAT TGGATCAACT CTTCAAGTAG ACTCCTCTGC CTCCATTTTT 
    TTTAAAAACT TTTCTTGTCT ATTATCGGTC TTTTGTTTCA TGTTAATGTT 
    TATGTGTAGA CGAACTAATA CAATCTCTGT TTTGTTTGAA TGGAACGCAA 
    AGTTGATATG CTTTTGTAGC AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT1G74970.1 [+] show detail - ribosomal protein S9
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein S9, conserved site 0
    HMMPanther Ribosomal protein S9 7.9e-40
    superfamily Ribosomal protein S5 domain 2-type fold 1.1e-45
    HMMPfam Ribosomal protein S9 9.6e-43
    Gene3D Ribosomal protein S5 domain 2-type fold, subgroup 6.4e-42

    See the detailed result >

    AT1G74970.1

    Model type
    Protein coding
    Short Description
    ribosomal protein S9
    Curator Summary
    ribosomal protein S9, nuclear encoded component of the chloroplast ribosome
    Computational Description
    ribosomal protein S9 (RPS9); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S9 (InterPro:IPR000754), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S9, conserved site (InterPro:IPR020574); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT3G49080.1); Has 7998 Blast hits to 7997 proteins in 2816 species: Archae - 205; Bacteria - 5347; Metazoa - 103; Fungi - 127; Plants - 149; Viruses - 0; Other Eukaryotes - 2067 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR