F13813

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13813

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F13813

Determination of introduced cDNA(s)

  • RAFL05-16-P20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-P20 - Resource: pda03031

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-P20 - full reading 
    CTTCACAATC CTCATAATCA CTTTCGAAAT TACATTTACG CTTTCTTGCA 
    ATCAAATTTT CCGATCTTAA GTTCAGAAGA CGATGTCAGA GGTGGAAATA 
    GAGAACGCTG CTACGATCGA AGGAAACACC GCTGCGGATG CGCCGGTGAC 
    GGATGCGGCC GTTGAGAAGA AGCCTGCAGC GAAAGGACGA AAGACGAAGA 
    ATGTTAAGGA AGTGAAGGAG AAGAAGACTG TTGCTGCCGC TCCGAAGAAG 
    AGAACTGTTT CATCTCATCC TACTTACGAA GAGATGATTA AGGATGCGAT 
    TGTTACGTTG AAAGAGAGAA CTGGATCTAG CCAATACGCG ATTCAGAAGT 
    TCATCGAGGA GAAGCGTAAG GAGCTTCCTC CAACATTCAG AAAGCTGTTG 
    CTTCTCAATC TGAAGAGACT CGTTGCTTCT GGGAAGCTTG TGAAGGTCAA 
    AGCCTCGTTT AAACTCCCAT CGGCGTCGGC TAAAGCATCA TCCCCTAAGG 
    CGGCAGCGGA GAAATCTGCT CCTGCGAAGA AGAAACCGGC GACTGTGGCG 
    GTTACCAAGG CGAAGAGAAA GGTCGCTGCG GCTTCCAAGG CTAAGAAAAC 
    AATCGCCGTT AAACCTAAGA CTGCTGCTGC TAAGAAAGTG ACCGCGAAGG 
    CTAAGGCTAA GCCCGTTCCT CGTGCCACTG CTGCTGCAAC TAAGAGGAAA 
    GCTGTTGATG CGAAGCCCAA GGCTAAGGCT AGACCAGCCA AGGCAGCCAA 
    AACGGCCAAG GTTACATCTC CGGCTAAGAA AGCTGTTGCT GCCACGAAGA 
    AAGTTGCTAC GGTGGCCACA AAGAAGAAGA CTCCGGTTAA GAAGGTTGTG 
    AAGCCAAAGA CGGTTAAGTC TCCAGCAAAG AGGGCTTCTT CTAGGGTTAA 
    GAAGTGAAGT TAGGGTTTGT AGGTAGAAGA ATGGTTAACG ATAGTTTAGA 
    CTTGTATAAT TCAATCATCT TTATGCGACT TTGTTTGCTT TTCTTCTTTC 
    AGTGTTCTTG TTATTCACAG TTCCTTTGGA CTACCCCTTA AATCATATAT 
    AGATTTCATC AATGAAGCAA AAAG

    Gene models with high sequence identity

    1. AT1G06760.1 [+] show detail - winged-helix DNA-binding transcription factor family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily "Winged helix" DNA-binding domain 3.7e-24
    FPrintScan Histone H5 2.9e-09
    FPrintScan Histone H5 2.9e-09
    FPrintScan Histone H5 2.9e-09
    HMMPfam Histone H1/H5 2.5e-23
    HMMSmart Histone H1/H5 9.7e-34
    HMMPanther HISTONE H1/H5 9.1e-38
    Gene3D Winged helix-turn-helix transcription repressor DNA-binding 5.8e-21

    See the detailed result >

    AT1G06760.1

    Model type
    Protein coding
    Short Description
    winged-helix DNA-binding transcription factor family protein
    Computational Description
    winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Histone H5 (InterPro:IPR005819), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT2G30620.1); Has 20265 Blast hits to 10904 proteins in 1494 species: Archae - 37; Bacteria - 8386; Metazoa - 4718; Fungi - 1128; Plants - 980; Viruses - 120; Other Eukaryotes - 4896 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR