F13819

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13819

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13819

Determination of introduced cDNA(s)

  • RAFL05-18-H10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-H10 - Resource: pda01330

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-18-H10 - full reading
    GCTCACATCG GAAACCCTAA ATCTCCACTC TCTCGCGCCT TTTACCCCTT 
    CTCAGAATCT TAACCATGGC GGCGACGAGC GAGCACACCA TCTTGCAATT
    TGTGTCTCCG TCATCAACGG CGTCCGCTAC AACCTCTGTA CTCACGGCGA
    GGATCCACCC TCTCGTTATC TTTAACGTCT GTGATTGCTT CGTGAGACGT
    CCTGACTCAG CTGAACGAGT CATCGGAACT CTCCTCGGAT CTATCTTACC
    TGACGGAACC GTCGATATCC GCAATTCATA CGCCGTCCCT CACAATGAAT
    CATCCGATCA GGTTGCTGTG GATATTGATT ACCACCACAA TATGTTAGCT
    TCACACCTTA AGGTGAATTC AAAGGAAACT ATTGTCGGCT GGTATTCAAC
    TGGTGCTGGG GTTAATGGCG GTAGTTCGCT GATTCATGAT TTCTATGCTA
    GAGAAGTACC CAACCCAATT CACCTAACTG TGGATACTGG GTTTACTAAT
    GGTGAGGGTA CTATCAAAGC TTTTGTCTCT TCAAACCTCT CACTCGGTGA
    TCGACAACTC GTTGCACATT TTCAAGAGAT TCCTGTTGAT CTCCGCATGG
    TTGATGCTGA GAGAGTCGGA TTCGATGTAC TTAAGGCAAC ATCTGTTGAC
    AAACTCCCAA ATGACTTGGA AGGAATGGAG TTAACAATGG AGAGGCTGTT
    AACTCTAATC AACGATGTCT ACAAATATGT TGACAGTGTC GTGGGAGGTC
    AAATAGCTCC AGACAACAAC ATTGGACGAT TCATTGCAGA TGCAGTAGCC
    TCCCTTCCCA AGTTACCTCC ACAAGTCTTC GATAACCTCG TGAATGATAG
    TCTCCAGGAC CAATTGCTTC TGTTGTACCT ATCAAGCATA ACAAGGACAC
    AGTTGAGTCT AGCGGAGAAG CTAAACACAG CTGCTCAAAT GCTATAATAA
    GCTTGGAAAC ACAAGGTTTT GCTAAAAATG GGGAATGCTG CTTTTTTGGT
    TTCGAATTTT CTTTTAACAA GTTTATGTAA GAATCAGCTT CTTGTTGTAG
    TGTTCCTAAA TTGCAAGTTT AAGAAAGACA AAATGCTCTG TTTCGTGAAT
    TAAGGTCTTT AAAAGGGATT TTTAGTTGGT GTGCCTAATT TTAAACAATA
    TACATATAAA AAAAAAAAAA AAA

    Gene models with high sequence identity

    1. AT2G39990.1 [+] show detail - eukaryotic translation initiation factor 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Mov34/MPN/PAD-1 2.3e-36
    HMMPfam Mov34/MPN/PAD-1 1e-19
    HMMPanther EUKARYOTIC TRANSLATION INITIATION FACTOR 3F, 5.4e-108
    HMMPanther EIF3F-RELATED 5.4e-108

    See the detailed result >

    AT2G39990.1

    Model type
    Protein coding
    Short Description
    eukaryotic translation initiation factor 2
    Curator Summary
    translation initiation factor eIF2 p47 subunit homolog
    Computational Description
    eukaryotic translation initiation factor 2 (EIF2); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: pollen germination, translational initiation, embryo development; LOCATED IN: eukaryotic translation initiation factor 3 complex, nucleus, membrane, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: Mov34/MPN/PAD-1 family protein (TAIR:AT3G11270.2); Has 1103 Blast hits to 1103 proteins in 237 species: Archae - 0; Bacteria - 0; Metazoa - 465; Fungi - 269; Plants - 187; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR