F13819

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13819

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13819

Determination of introduced cDNA(s)

  • RAFL05-18-H10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-H10 - Resource: pda01330

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-18-H10 - full reading 
    GCTCACATCG GAAACCCTAA ATCTCCACTC TCTCGCGCCT TTTACCCCTT 
    CTCAGAATCT TAACCATGGC GGCGACGAGC GAGCACACCA TCTTGCAATT 
    TGTGTCTCCG TCATCAACGG CGTCCGCTAC AACCTCTGTA CTCACGGCGA 
    GGATCCACCC TCTCGTTATC TTTAACGTCT GTGATTGCTT CGTGAGACGT 
    CCTGACTCAG CTGAACGAGT CATCGGAACT CTCCTCGGAT CTATCTTACC 
    TGACGGAACC GTCGATATCC GCAATTCATA CGCCGTCCCT CACAATGAAT 
    CATCCGATCA GGTTGCTGTG GATATTGATT ACCACCACAA TATGTTAGCT 
    TCACACCTTA AGGTGAATTC AAAGGAAACT ATTGTCGGCT GGTATTCAAC 
    TGGTGCTGGG GTTAATGGCG GTAGTTCGCT GATTCATGAT TTCTATGCTA 
    GAGAAGTACC CAACCCAATT CACCTAACTG TGGATACTGG GTTTACTAAT 
    GGTGAGGGTA CTATCAAAGC TTTTGTCTCT TCAAACCTCT CACTCGGTGA 
    TCGACAACTC GTTGCACATT TTCAAGAGAT TCCTGTTGAT CTCCGCATGG 
    TTGATGCTGA GAGAGTCGGA TTCGATGTAC TTAAGGCAAC ATCTGTTGAC 
    AAACTCCCAA ATGACTTGGA AGGAATGGAG TTAACAATGG AGAGGCTGTT 
    AACTCTAATC AACGATGTCT ACAAATATGT TGACAGTGTC GTGGGAGGTC 
    AAATAGCTCC AGACAACAAC ATTGGACGAT TCATTGCAGA TGCAGTAGCC 
    TCCCTTCCCA AGTTACCTCC ACAAGTCTTC GATAACCTCG TGAATGATAG 
    TCTCCAGGAC CAATTGCTTC TGTTGTACCT ATCAAGCATA ACAAGGACAC 
    AGTTGAGTCT AGCGGAGAAG CTAAACACAG CTGCTCAAAT GCTATAATAA 
    GCTTGGAAAC ACAAGGTTTT GCTAAAAATG GGGAATGCTG CTTTTTTGGT 
    TTCGAATTTT CTTTTAACAA GTTTATGTAA GAATCAGCTT CTTGTTGTAG 
    TGTTCCTAAA TTGCAAGTTT AAGAAAGACA AAATGCTCTG TTTCGTGAAT 
    TAAGGTCTTT AAAAGGGATT TTTAGTTGGT GTGCCTAATT TTAAACAATA 
    TACATATAAA AAAAAAAAAA AAA

    Gene models with high sequence identity

    1. AT2G39990.1 [+] show detail - eukaryotic translation initiation factor 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Mov34/MPN/PAD-1 2.3e-36
    HMMPfam Mov34/MPN/PAD-1 1e-19
    HMMPanther EUKARYOTIC TRANSLATION INITIATION FACTOR 3F, 5.4e-108
    HMMPanther EIF3F-RELATED 5.4e-108

    See the detailed result >

    AT2G39990.1

    Model type
    Protein coding
    Short Description
    eukaryotic translation initiation factor 2
    Curator Summary
    translation initiation factor eIF2 p47 subunit homolog
    Computational Description
    eukaryotic translation initiation factor 2 (EIF2); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: pollen germination, translational initiation, embryo development; LOCATED IN: eukaryotic translation initiation factor 3 complex, nucleus, membrane, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: Mov34/MPN/PAD-1 family protein (TAIR:AT3G11270.2); Has 1103 Blast hits to 1103 proteins in 237 species: Archae - 0; Bacteria - 0; Metazoa - 465; Fungi - 269; Plants - 187; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR